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Diffstat (limited to 'dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/reverse-complement.c')
-rw-r--r--dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/reverse-complement.c102
1 files changed, 102 insertions, 0 deletions
diff --git a/dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/reverse-complement.c b/dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/reverse-complement.c
new file mode 100644
index 0000000..ed2c982
--- /dev/null
+++ b/dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/reverse-complement.c
@@ -0,0 +1,102 @@
+// +build ignore
+
+/*
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+
+ * Neither the name of "The Computer Language Benchmarks Game" nor the
+ name of "The Computer Language Shootout Benchmarks" nor the names of
+ its contributors may be used to endorse or promote products derived
+ from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGE.
+*/
+
+/*
+ * The Computer Language Benchmarks Game
+ * http://shootout.alioth.debian.org
+ *
+ * contributed by Bob W
+ */
+
+#include <stdio.h>
+#include <stdlib.h>
+
+#define JBFSIZE 82 // line input buffer size
+#define QBFSIZE 5200 // output buffer initial size
+#define Z16 "\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"
+#define V32 "\0TVGH\0\0CD\0\0M\0KN\0\0\0YSA\0BW\0R\0\0\0\0\0\0"
+#define VALL Z16 Z16 Z16 Z16 V32 V32 Z16 Z16 Z16 Z16 Z16 Z16 Z16 Z16
+
+int errex(char *s, int n) { // error message+value, return 1
+ fprintf(stderr,"\n*** Error: %s [%d]!\n", s, n);
+ return 1;
+}
+
+int main () { // ***** main *****
+ char *pj, *pq, *pr; // buffer pointers: inp,out,/out
+ char *jjj = malloc(JBFSIZE); // allocate input line buffer
+ char *qqq = malloc(QBFSIZE); // output buffer (dyn. size)
+ char *pqstop = qqq+QBFSIZE; // end-of-buffer pointer
+ char xtab[256] = VALL; // char conversion table
+
+ if (!jjj || !qqq)
+ return errex("Buffer allocation", !jjj + !qqq);
+ pj = fgets(jjj,JBFSIZE,stdin); // fetch 1st line
+ if (!pj)
+ return errex("No input data",0);
+ if (*jjj != '>')
+ return errex("1st char not '>'", 0);
+
+ while (pj) { // MAIN LOOP: process data
+ fputs(jjj, stdout); // output ID line
+
+ for (pq=qqq+1, pr=pqstop; ; pq++) { // LOOP: fill output buffer
+ pj = fgets(jjj, JBFSIZE, stdin); // get line from stdin
+ if (!pj || (*jjj=='>')) break; // EOF or new ID line
+ if (pr <= (pq+61)) { // need to resize buffer
+ char *newstop = pqstop + 12777888;
+ char *newptr = realloc(qqq, newstop-qqq);
+ if (!newptr)
+ return errex("Out of memory", 0);
+ if (newptr != qqq) { // new base: adj. pointers
+ size_t x = newptr-qqq; // offset for pointer update
+ pq+=x; pr+=x; qqq+=x;
+ newstop+=x; pqstop+=x;
+ }
+ pr = __builtin_memmove(newstop-(pqstop-pr), pr, pqstop-pr);
+ pqstop = newstop; // buffer resize complete
+ }
+ while (*pj) { // LOOP: conv. & revert line
+ char c = xtab[(unsigned char)(*pj++)];
+ if (c) // conversion valid
+ *(--pr) = c;
+ }
+ }
+
+ for (pq = qqq; pr<pqstop; ) { // LOOP: format output
+ size_t x = (pqstop-pr)<60 ? pqstop-pr : 60;
+ __builtin_memmove(pq,pr,x); // move line to free space
+ pr+=x; pq+=x; *(pq++) = 0xA; // adjust pointers, add LF
+ }
+ fwrite(qqq, 1, pq-qqq, stdout); // output converted data
+ }
+ return 0;
+}