From b09c6d56832eb1718c07d74abf3bc6ae3fe4e030 Mon Sep 17 00:00:00 2001 From: Daniel Baumann Date: Sun, 28 Apr 2024 14:36:04 +0200 Subject: Adding upstream version 1.1.0. Signed-off-by: Daniel Baumann --- .../shootout/fasta.txt | 171 +++++++++++++++++++++ 1 file changed, 171 insertions(+) create mode 100644 dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/fasta.txt (limited to 'dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/fasta.txt') diff --git a/dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/fasta.txt b/dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/fasta.txt new file mode 100644 index 0000000..f1caba0 --- /dev/null +++ b/dependencies/pkg/mod/golang.org/x/exp@v0.0.0-20220613132600-b0d781184e0d/shootout/fasta.txt @@ -0,0 +1,171 @@ +>ONE Homo sapiens alu +GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA +TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACT +AAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAG +GCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCG +CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGT +GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCA +GGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA +TTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG +AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA +GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGT +AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACC +AGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTG +GTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACC +CGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAG +AGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTT +TGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA +TGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT +GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGG +TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGT +CTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG +CGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCG +TCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTA +CTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCG +AGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCG +GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACC +TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA +TACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGA +GGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACT +GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTC +ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGT +TCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC +CGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG +CTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTG +GGCGACAGAGCGAGACTCCG +>TWO IUB ambiguity codes +cttBtatcatatgctaKggNcataaaSatgtaaaDcDRtBggDtctttataattcBgtcg +tactDtDagcctatttSVHtHttKtgtHMaSattgWaHKHttttagacatWatgtRgaaa +NtactMcSMtYtcMgRtacttctWBacgaaatatagScDtttgaagacacatagtVgYgt +cattHWtMMWcStgttaggKtSgaYaaccWStcgBttgcgaMttBYatcWtgacaYcaga +gtaBDtRacttttcWatMttDBcatWtatcttactaBgaYtcttgttttttttYaaScYa +HgtgttNtSatcMtcVaaaStccRcctDaataataStcYtRDSaMtDttgttSagtRRca +tttHatSttMtWgtcgtatSSagactYaaattcaMtWatttaSgYttaRgKaRtccactt +tattRggaMcDaWaWagttttgacatgttctacaaaRaatataataaMttcgDacgaSSt +acaStYRctVaNMtMgtaggcKatcttttattaaaaagVWaHKYagtttttatttaacct +tacgtVtcVaattVMBcttaMtttaStgacttagattWWacVtgWYagWVRctDattBYt +gtttaagaagattattgacVatMaacattVctgtBSgaVtgWWggaKHaatKWcBScSWa +accRVacacaaactaccScattRatatKVtactatatttHttaagtttSKtRtacaaagt +RDttcaaaaWgcacatWaDgtDKacgaacaattacaRNWaatHtttStgttattaaMtgt +tgDcgtMgcatBtgcttcgcgaDWgagctgcgaggggVtaaScNatttacttaatgacag +cccccacatYScaMgtaggtYaNgttctgaMaacNaMRaacaaacaKctacatagYWctg +ttWaaataaaataRattagHacacaagcgKatacBttRttaagtatttccgatctHSaat +actcNttMaagtattMtgRtgaMgcataatHcMtaBSaRattagttgatHtMttaaKagg +YtaaBataSaVatactWtataVWgKgttaaaacagtgcgRatatacatVtHRtVYataSa +KtWaStVcNKHKttactatccctcatgWHatWaRcttactaggatctataDtDHBttata +aaaHgtacVtagaYttYaKcctattcttcttaataNDaaggaaaDYgcggctaaWSctBa +aNtgctggMBaKctaMVKagBaactaWaDaMaccYVtNtaHtVWtKgRtcaaNtYaNacg +gtttNattgVtttctgtBaWgtaattcaagtcaVWtactNggattctttaYtaaagccgc +tcttagHVggaYtgtNcDaVagctctctKgacgtatagYcctRYHDtgBattDaaDgccK +tcHaaStttMcctagtattgcRgWBaVatHaaaataYtgtttagMDMRtaataaggatMt +ttctWgtNtgtgaaaaMaatatRtttMtDgHHtgtcattttcWattRSHcVagaagtacg +ggtaKVattKYagactNaatgtttgKMMgYNtcccgSKttctaStatatNVataYHgtNa +BKRgNacaactgatttcctttaNcgatttctctataScaHtataRagtcRVttacDSDtt +aRtSatacHgtSKacYagttMHtWataggatgactNtatSaNctataVtttRNKtgRacc +tttYtatgttactttttcctttaaacatacaHactMacacggtWataMtBVacRaSaatc +cgtaBVttccagccBcttaRKtgtgcctttttRtgtcagcRttKtaaacKtaaatctcac +aattgcaNtSBaaccgggttattaaBcKatDagttactcttcattVtttHaaggctKKga +tacatcBggScagtVcacattttgaHaDSgHatRMaHWggtatatRgccDttcgtatcga +aacaHtaagttaRatgaVacttagattVKtaaYttaaatcaNatccRttRRaMScNaaaD +gttVHWgtcHaaHgacVaWtgttScactaagSgttatcttagggDtaccagWattWtRtg +ttHWHacgattBtgVcaYatcggttgagKcWtKKcaVtgaYgWctgYggVctgtHgaNcV +taBtWaaYatcDRaaRtSctgaHaYRttagatMatgcatttNattaDttaattgttctaa +ccctcccctagaWBtttHtBccttagaVaatMcBHagaVcWcagBVttcBtaYMccagat +gaaaaHctctaacgttagNWRtcggattNatcRaNHttcagtKttttgWatWttcSaNgg +gaWtactKKMaacatKatacNattgctWtatctaVgagctatgtRaHtYcWcttagccaa +tYttWttaWSSttaHcaaaaagVacVgtaVaRMgattaVcDactttcHHggHRtgNcctt +tYatcatKgctcctctatVcaaaaKaaaagtatatctgMtWtaaaacaStttMtcgactt +taSatcgDataaactaaacaagtaaVctaggaSccaatMVtaaSKNVattttgHccatca +cBVctgcaVatVttRtactgtVcaattHgtaaattaaattttYtatattaaRSgYtgBag +aHSBDgtagcacRHtYcBgtcacttacactaYcgctWtattgSHtSatcataaatataHt +cgtYaaMNgBaatttaRgaMaatatttBtttaaaHHKaatctgatWatYaacttMctctt +ttVctagctDaaagtaVaKaKRtaacBgtatccaaccactHHaagaagaaggaNaaatBW +attccgStaMSaMatBttgcatgRSacgttVVtaaDMtcSgVatWcaSatcttttVatag +ttactttacgatcaccNtaDVgSRcgVcgtgaacgaNtaNatatagtHtMgtHcMtagaa +attBgtataRaaaacaYKgtRccYtatgaagtaataKgtaaMttgaaRVatgcagaKStc +tHNaaatctBBtcttaYaBWHgtVtgacagcaRcataWctcaBcYacYgatDgtDHccta +>THREE Homo sapiens frequency +aacacttcaccaggtatcgtgaaggctcaagattacccagagaacctttgcaatataaga +atatgtatgcagcattaccctaagtaattatattctttttctgactcaaagtgacaagcc +ctagtgtatattaaatcggtatatttgggaaattcctcaaactatcctaatcaggtagcc +atgaaagtgatcaaaaaagttcgtacttataccatacatgaattctggccaagtaaaaaa +tagattgcgcaaaattcgtaccttaagtctctcgccaagatattaggatcctattactca +tatcgtgtttttctttattgccgccatccccggagtatctcacccatccttctcttaaag +gcctaatattacctatgcaaataaacatatattgttgaaaattgagaacctgatcgtgat +tcttatgtgtaccatatgtatagtaatcacgcgactatatagtgctttagtatcgcccgt +gggtgagtgaatattctgggctagcgtgagatagtttcttgtcctaatatttttcagatc +gaatagcttctatttttgtgtttattgacatatgtcgaaactccttactcagtgaaagtc +atgaccagatccacgaacaatcttcggaatcagtctcgttttacggcggaatcttgagtc +taacttatatcccgtcgcttactttctaacaccccttatgtatttttaaaattacgttta +ttcgaacgtacttggcggaagcgttattttttgaagtaagttacattgggcagactcttg +acattttcgatacgactttctttcatccatcacaggactcgttcgtattgatatcagaag +ctcgtgatgattagttgtcttctttaccaatactttgaggcctattctgcgaaatttttg +ttgccctgcgaacttcacataccaaggaacacctcgcaacatgccttcatatccatcgtt +cattgtaattcttacacaatgaatcctaagtaattacatccctgcgtaaaagatggtagg +ggcactgaggatatattaccaagcatttagttatgagtaatcagcaatgtttcttgtatt +aagttctctaaaatagttacatcgtaatgttatctcgggttccgcgaataaacgagatag +attcattatatatggccctaagcaaaaacctcctcgtattctgttggtaattagaatcac +acaatacgggttgagatattaattatttgtagtacgaagagatataaaaagatgaacaat +tactcaagtcaagatgtatacgggatttataataaaaatcgggtagagatctgctttgca +attcagacgtgccactaaatcgtaatatgtcgcgttacatcagaaagggtaactattatt +aattaataaagggcttaatcactacatattagatcttatccgatagtcttatctattcgt +tgtatttttaagcggttctaattcagtcattatatcagtgctccgagttctttattattg +ttttaaggatgacaaaatgcctcttgttataacgctgggagaagcagactaagagtcgga +gcagttggtagaatgaggctgcaaaagacggtctcgacgaatggacagactttactaaac +caatgaaagacagaagtagagcaaagtctgaagtggtatcagcttaattatgacaaccct +taatacttccctttcgccgaatactggcgtggaaaggttttaaaagtcgaagtagttaga +ggcatctctcgctcataaataggtagactactcgcaatccaatgtgactatgtaatactg +ggaacatcagtccgcgatgcagcgtgtttatcaaccgtccccactcgcctggggagacat +gagaccacccccgtggggattattagtccgcagtaatcgactcttgacaatccttttcga +ttatgtcatagcaatttacgacagttcagcgaagtgactactcggcgaaatggtattact +aaagcattcgaacccacatgaatgtgattcttggcaatttctaatccactaaagcttttc +cgttgaatctggttgtagatatttatataagttcactaattaagatcacggtagtatatt +gatagtgatgtctttgcaagaggttggccgaggaatttacggattctctattgatacaat +ttgtctggcttataactcttaaggctgaaccaggcgtttttagacgacttgatcagctgt +tagaatggtttggactccctctttcatgtcagtaacatttcagccgttattgttacgata +tgcttgaacaatattgatctaccacacacccatagtatattttataggtcatgctgttac +ctacgagcatggtattccacttcccattcaatgagtattcaacatcactagcctcagaga +tgatgacccacctctaataacgtcacgttgcggccatgtgaaacctgaacttgagtagac +gatatcaagcgctttaaattgcatataacatttgagggtaaagctaagcggatgctttat +ataatcaatactcaataataagatttgattgcattttagagttatgacacgacatagttc +actaacgagttactattcccagatctagactgaagtactgatcgagacgatccttacgtc +gatgatcgttagttatcgacttaggtcgggtctctagcggtattggtacttaaccggaca +ctatactaataacccatgatcaaagcataacagaatacagacgataatttcgccaacata +tatgtacagaccccaagcatgagaagctcattgaaagctatcattgaagtcccgctcaca +atgtgtcttttccagacggtttaactggttcccgggagtcctggagtttcgacttacata +aatggaaacaatgtattttgctaatttatctatagcgtcatttggaccaatacagaatat +tatgttgcctagtaatccactataacccgcaagtgctgatagaaaatttttagacgattt +ataaatgccccaagtatccctcccgtgaatcctccgttatactaattagtattcgttcat +acgtataccgcgcatatatgaacatttggcgataaggcgcgtgaattgttacgtgacaga +gatagcagtttcttgtgatatggttaacagacgtacatgaagggaaactttatatctata +gtgatgcttccgtagaaataccgccactggtctgccaatgatgaagtatgtagctttagg +tttgtactatgaggctttcgtttgtttgcagagtataacagttgcgagtgaaaaaccgac +gaatttatactaatacgctttcactattggctacaaaatagggaagagtttcaatcatga +gagggagtatatggatgctttgtagctaaaggtagaacgtatgtatatgctgccgttcat +tcttgaaagatacataagcgataagttacgacaattataagcaacatccctaccttcgta +acgatttcactgttactgcgcttgaaatacactatggggctattggcggagagaagcaga +tcgcgccgagcatatacgagacctataatgttgatgatagagaaggcgtctgaattgata +catcgaagtacactttctttcgtagtatctctcgtcctctttctatctccggacacaaga +attaagttatatatatagagtcttaccaatcatgttgaatcctgattctcagagttcttt +ggcgggccttgtgatgactgagaaacaatgcaatattgctccaaatttcctaagcaaatt +ctcggttatgttatgttatcagcaaagcgttacgttatgttatttaaatctggaatgacg +gagcgaagttcttatgtcggtgtgggaataattcttttgaagacagcactccttaaataa +tatcgctccgtgtttgtatttatcgaatgggtctgtaaccttgcacaagcaaatcggtgg +tgtatatatcggataacaattaatacgatgttcatagtgacagtatactgatcgagtcct +ctaaagtcaattacctcacttaacaatctcattgatgttgtgtcattcccggtatcgccc +gtagtatgtgctctgattgaccgagtgtgaaccaaggaacatctactaatgcctttgtta +ggtaagatctctctgaattccttcgtgccaacttaaaacattatcaaaatttcttctact +tggattaactacttttacgagcatggcaaattcccctgtggaagacggttcattattatc +ggaaaccttatagaaattgcgtgttgactgaaattagatttttattgtaagagttgcatc +tttgcgattcctctggtctagcttccaatgaacagtcctcccttctattcgacatcgggt +ccttcgtacatgtctttgcgatgtaataattaggttcggagtgtggccttaatgggtgca +actaggaatacaacgcaaatttgctgacatgatagcaaatcggtatgccggcaccaaaac +gtgctccttgcttagcttgtgaatgagactcagtagttaaataaatccatatctgcaatc +gattccacaggtattgtccactatctttgaactactctaagagatacaagcttagctgag +accgaggtgtatatgactacgctgatatctgtaaggtaccaatgcaggcaaagtatgcga +gaagctaataccggctgtttccagctttataagattaaaatttggctgtcctggcggcct +cagaattgttctatcgtaatcagttggttcattaattagctaagtacgaggtacaactta +tctgtcccagaacagctccacaagtttttttacagccgaaacccctgtgtgaatcttaat +atccaagcgcgttatctgattagagtttacaactcagtattttatcagtacgttttgttt +ccaacattacccggtatgacaaaatgacgccacgtgtcgaataatggtctgaccaatgta +ggaagtgaaaagataaatat -- cgit v1.2.3