1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
|
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
feather_file <- tempfile()
tib <- tibble::tibble(x = 1:10, y = rnorm(10), z = letters[1:10])
test_that("Write a feather file", {
tib_out <- write_feather(tib, feather_file)
expect_true(file.exists(feather_file))
# Input is returned unmodified
expect_identical(tib_out, tib)
})
expect_feather_roundtrip <- function(write_fun) {
tf2 <- normalizePath(tempfile(), mustWork = FALSE)
tf3 <- tempfile()
on.exit({
unlink(tf2)
unlink(tf3)
})
# Write two ways. These are what varies with each run
write_fun(tib, tf2)
expect_true(file.exists(tf2))
stream <- FileOutputStream$create(tf3)
write_fun(tib, stream)
stream$close()
expect_true(file.exists(tf3))
# Read both back
tab2 <- read_feather(tf2)
expect_s3_class(tab2, "data.frame")
tab3 <- read_feather(tf3)
expect_s3_class(tab3, "data.frame")
# reading directly from arrow::io::MemoryMappedFile
tab4 <- read_feather(mmap_open(tf3))
expect_s3_class(tab4, "data.frame")
# reading directly from arrow::io::ReadableFile
tab5 <- read_feather(ReadableFile$create(tf3))
expect_s3_class(tab5, "data.frame")
expect_equal(tib, tab2)
expect_equal(tib, tab3)
expect_equal(tib, tab4)
expect_equal(tib, tab5)
}
test_that("feather read/write round trip", {
expect_feather_roundtrip(function(x, f) write_feather(x, f, version = 1))
expect_feather_roundtrip(function(x, f) write_feather(x, f, version = 2))
expect_feather_roundtrip(function(x, f) write_feather(x, f, chunk_size = 32))
if (codec_is_available("lz4")) {
expect_feather_roundtrip(function(x, f) write_feather(x, f, compression = "lz4"))
}
if (codec_is_available("zstd")) {
expect_feather_roundtrip(function(x, f) write_feather(x, f, compression = "zstd"))
expect_feather_roundtrip(function(x, f) write_feather(x, f, compression = "zstd", compression_level = 3))
}
# Write from Arrow data structures
expect_feather_roundtrip(function(x, f) write_feather(RecordBatch$create(x), f))
expect_feather_roundtrip(function(x, f) write_feather(Table$create(x), f))
})
test_that("write_feather option error handling", {
tf <- tempfile()
expect_false(file.exists(tf))
expect_error(
write_feather(tib, tf, version = 1, chunk_size = 1024),
"Feather version 1 does not support the 'chunk_size' option"
)
expect_error(
write_feather(tib, tf, version = 1, compression = "lz4"),
"Feather version 1 does not support the 'compression' option"
)
expect_error(
write_feather(tib, tf, version = 1, compression_level = 1024),
"Feather version 1 does not support the 'compression_level' option"
)
expect_error(
write_feather(tib, tf, compression_level = 1024),
"Can only specify a 'compression_level' when 'compression' is 'zstd'"
)
expect_match_arg_error(write_feather(tib, tf, compression = "bz2"))
expect_false(file.exists(tf))
})
test_that("write_feather with invalid input type", {
bad_input <- Array$create(1:5)
expect_error(
write_feather(bad_input, feather_file),
regexp = "x must be an object of class 'data.frame', 'RecordBatch', or 'Table', not 'Array'."
)
})
test_that("read_feather supports col_select = <names>", {
tab1 <- read_feather(feather_file, col_select = c("x", "y"))
expect_s3_class(tab1, "data.frame")
expect_equal(tib$x, tab1$x)
expect_equal(tib$y, tab1$y)
})
test_that("feather handles col_select = <integer>", {
tab1 <- read_feather(feather_file, col_select = 1:2)
expect_s3_class(tab1, "data.frame")
expect_equal(tib$x, tab1$x)
expect_equal(tib$y, tab1$y)
})
test_that("feather handles col_select = <tidyselect helper>", {
tab1 <- read_feather(feather_file, col_select = everything())
expect_identical(tib, tab1)
tab2 <- read_feather(feather_file, col_select = starts_with("x"))
expect_identical(tab2, tib[, "x", drop = FALSE])
tab3 <- read_feather(feather_file, col_select = c(starts_with("x"), contains("y")))
expect_identical(tab3, tib[, c("x", "y"), drop = FALSE])
tab4 <- read_feather(feather_file, col_select = -z)
expect_identical(tab4, tib[, c("x", "y"), drop = FALSE])
})
test_that("feather read/write round trip", {
tab1 <- read_feather(feather_file, as_data_frame = FALSE)
expect_r6_class(tab1, "Table")
expect_equal(tib, as.data.frame(tab1))
})
test_that("Read feather from raw vector", {
test_raw <- readBin(feather_file, what = "raw", n = 5000)
df <- read_feather(test_raw)
expect_s3_class(df, "data.frame")
})
test_that("FeatherReader", {
v1 <- tempfile()
v2 <- tempfile()
on.exit({
unlink(v1)
unlink(v2)
})
write_feather(tib, v1, version = 1)
write_feather(tib, v2)
f1 <- make_readable_file(v1)
reader1 <- FeatherReader$create(f1)
f1$close()
expect_identical(reader1$version, 1L)
f2 <- make_readable_file(v2)
reader2 <- FeatherReader$create(f2)
expect_identical(reader2$version, 2L)
f2$close()
})
test_that("read_feather requires RandomAccessFile and errors nicely otherwise (ARROW-8615)", {
skip_if_not_available("gzip")
expect_error(
read_feather(CompressedInputStream$create(feather_file)),
'file must be a "RandomAccessFile"'
)
})
test_that("read_feather closes connection to file", {
tf <- tempfile()
on.exit(unlink(tf))
write_feather(tib, sink = tf)
expect_true(file.exists(tf))
read_feather(tf)
expect_error(file.remove(tf), NA)
expect_false(file.exists(tf))
})
test_that("Character vectors > 2GB can write to feather", {
skip_on_cran()
skip_if_not_running_large_memory_tests()
df <- tibble::tibble(big = make_big_string())
tf <- tempfile()
on.exit(unlink(tf))
write_feather(df, tf)
expect_identical(read_feather(tf), df)
})
test_that("FeatherReader methods", {
# Setup a feather file to use in the test
feather_temp <- tempfile()
on.exit({
unlink(feather_temp)
})
write_feather(tib, feather_temp)
feather_temp_RA <- make_readable_file(feather_temp)
reader <- FeatherReader$create(feather_temp_RA)
feather_temp_RA$close()
# column_names
expect_identical(
reader$column_names,
c("x", "y", "z")
)
# print method
expect_identical(
capture.output(print(reader)),
# TODO: can we get rows/columns?
c("FeatherReader:", "Schema", "x: int32", "y: double", "z: string")
)
})
unlink(feather_file)
ft_file <- test_path("golden-files/data-arrow_2.0.0_lz4.feather")
test_that("Error messages are shown when the compression algorithm lz4 is not found", {
msg <- paste0(
"NotImplemented: Support for codec 'lz4' not built\nIn order to read this file, ",
"you will need to reinstall arrow with additional features enabled.\nSet one of ",
"these environment variables before installing:\n\n * LIBARROW_MINIMAL=false ",
"(for all optional features, including 'lz4')\n * ARROW_WITH_LZ4=ON (for just 'lz4')",
"\n\nSee https://arrow.apache.org/docs/r/articles/install.html for details"
)
if (codec_is_available("lz4")) {
d <- read_feather(ft_file)
expect_s3_class(d, "data.frame")
} else {
expect_error(read_feather(ft_file), msg, fixed = TRUE)
}
})
test_that("Error is created when feather reads a parquet file", {
expect_error(
read_feather(system.file("v0.7.1.parquet", package = "arrow")),
"Not a Feather V1 or Arrow IPC file"
)
})
|