Adding upstream version 2.117.0.upstream/2.117.0upstream

Signed-off-by: Daniel Baumann <daniel.baumann@progress-linux.org>

29 files changed, 132 insertions, 0 deletions

diff --git a/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/control.in b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/control.in
new file mode 100644
index 0000000..6b125db
--- /dev/null
+++ b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/control.in
@@ -0,0 +1,29 @@
+Source: [% $source %]
+Priority: optional
+Section: gnu-r
+Maintainer: [% $author %]
+Standards-Version: [% $standards_version %]
+Build-Depends: [% $build_depends %]
+Rules-Requires-Root: no
+
+Package: r-cran-positive
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: [% $description %] (wrong)
+ This is a test package designed to exercise some feature or tag of
+ Lintian.  It is part of the Lintian test suite and may do very odd
+ things.  It should not be installed like a regular package.  It may
+ be an empty package.
+ .
+ This package has an incorrect Architecture field.
+
+Package: r-cran-false-positive
+Architecture: all
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: [% $description %] (right)
+ This is a test package designed to exercise some feature or tag of
+ Lintian.  It is part of the Lintian test suite and may do very odd
+ things.  It should not be installed like a regular package.  It may
+ be an empty package.
+ .
+ This package has the correct Architecture field.
diff --git a/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/r-cran-false-positive.install b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/r-cran-false-positive.install
new file mode 100644
index 0000000..613f993
--- /dev/null
+++ b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/r-cran-false-positive.install
@@ -0,0 +1 @@
+DESCRIPTION usr/lib/R/site-library/false-positive
diff --git a/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/r-cran-positive.install b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/r-cran-positive.install
new file mode 100644
index 0000000..9464141
--- /dev/null
+++ b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/debian/r-cran-positive.install
@@ -0,0 +1 @@
+DESCRIPTION usr/lib/R/site-library/positive
diff --git a/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/fill-values b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/fill-values
new file mode 100644
index 0000000..276affc
--- /dev/null
+++ b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/fill-values
@@ -0,0 +1,3 @@
+Testname: fields-r-package-not-arch-all
+Skeleton: upload-non-native
+Description: Tests for Architecture of an R package
diff --git a/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/orig/DESCRIPTION b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/orig/DESCRIPTION
new file mode 100644
index 0000000..48a7223
--- /dev/null
+++ b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/build-spec/orig/DESCRIPTION
@@ -0,0 +1,19 @@
+Package: urca
+Version: 1.3-0
+Date: 2016-09-06
+Title: Unit Root and Cointegration Tests for Time Series Data
+Authors@R: c(person("Bernhard", "Pfaff", email = "bernhard@pfaffikus.de", role = c("aut", "cre")), person("Eric", "Zivot",email = "ezivot@u.washington.edu", role = "ctb"), person("Matthieu", "Stigler", role = "ctb"))
+Depends: R (>= 2.0.0), methods
+Imports: nlme, graphics, stats
+LazyLoad: yes
+Description: Unit root and cointegration tests encountered in applied 
+ econometric analysis are implemented.
+License: GPL (>= 2)
+NeedsCompilation: no
+Packaged: 2016-09-06 20:57:19 UTC; bp
+Author: Bernhard Pfaff [aut, cre],
+  Eric Zivot [ctb],
+  Matthieu Stigler [ctb]
+Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
+Repository: CRAN
+Date/Publication: 2016-09-06 23:26:02
diff --git a/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/eval/desc b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/eval/desc
new file mode 100644
index 0000000..ec766f6
--- /dev/null
+++ b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/eval/desc
@@ -0,0 +1,2 @@
+Testname: fields-r-package-not-arch-all
+Check: languages/r/architecture
diff --git a/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/eval/hints b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/eval/hints
new file mode 100644
index 0000000..89c7803
--- /dev/null
+++ b/t/recipes/checks/languages/r/architecture/fields-r-package-not-arch-all/eval/hints
@@ -0,0 +1 @@
+r-cran-positive (binary): r-package-not-arch-all
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/debian/install b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/debian/install
new file mode 100644
index 0000000..7cd27d5
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/debian/install
@@ -0,0 +1 @@
+src/* usr/lib/R/site-library/files-r-data
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/fill-values b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/fill-values
new file mode 100644
index 0000000..fb4d856
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/fill-values
@@ -0,0 +1,3 @@
+Skeleton: upload-native
+Testname: files-r-data-unrel
+Description: Checks for R statistical data files (false positives)
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.Rda b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.Rda
new file mode 100644
index 0000000..ac654ef
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.Rda
@@ -0,0 +1 @@
+Not an R file.
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.Rdata b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.Rdata
new file mode 100644
index 0000000..ac654ef
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.Rdata
@@ -0,0 +1 @@
+Not an R file.
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.rda b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.rda
new file mode 100644
index 0000000..ac654ef
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.rda
@@ -0,0 +1 @@
+Not an R file.
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.rdata b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.rdata
new file mode 100644
index 0000000..ac654ef
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/build-spec/orig/src/test.rdata
@@ -0,0 +1 @@
+Not an R file.
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/eval/desc b/t/recipes/checks/languages/r/files-r-data-unrel/eval/desc
new file mode 100644
index 0000000..91993ea
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/eval/desc
@@ -0,0 +1,4 @@
+Testname: files-r-data-unrel
+Test-Against:
+ r-data-without-readme-source
+Check: languages/r
diff --git a/t/recipes/checks/languages/r/files-r-data-unrel/eval/hints b/t/recipes/checks/languages/r/files-r-data-unrel/eval/hints
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data-unrel/eval/hints
diff --git a/t/recipes/checks/languages/r/files-r-data/build-spec/debian/install b/t/recipes/checks/languages/r/files-r-data/build-spec/debian/install
new file mode 100644
index 0000000..7cd27d5
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/build-spec/debian/install
@@ -0,0 +1 @@
+src/* usr/lib/R/site-library/files-r-data
diff --git a/t/recipes/checks/languages/r/files-r-data/build-spec/fill-values b/t/recipes/checks/languages/r/files-r-data/build-spec/fill-values
new file mode 100644
index 0000000..d93508c
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/build-spec/fill-values
@@ -0,0 +1,3 @@
+Skeleton: upload-native
+Testname: files-r-data
+Description: Checks for R statistical data files
diff --git a/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.Rda b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.Rda
new file mode 100644
index 0000000..6c6b186
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.Rda
diff --git a/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.Rdata b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.Rdata
new file mode 100644
index 0000000..6c6b186
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.Rdata
diff --git a/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.rda b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.rda
new file mode 100644
index 0000000..6c6b186
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.rda
diff --git a/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.rdata b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.rdata
new file mode 100644
index 0000000..6c6b186
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/build-spec/orig/src/test.rdata
diff --git a/t/recipes/checks/languages/r/files-r-data/eval/desc b/t/recipes/checks/languages/r/files-r-data/eval/desc
new file mode 100644
index 0000000..f2c1209
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/eval/desc
@@ -0,0 +1,2 @@
+Testname: files-r-data
+Check: languages/r
diff --git a/t/recipes/checks/languages/r/files-r-data/eval/hints b/t/recipes/checks/languages/r/files-r-data/eval/hints
new file mode 100644
index 0000000..f836553
--- /dev/null
+++ b/t/recipes/checks/languages/r/files-r-data/eval/hints
@@ -0,0 +1,4 @@
+files-r-data (source): r-data-without-readme-source [src/test.rdata]
+files-r-data (source): r-data-without-readme-source [src/test.rda]
+files-r-data (source): r-data-without-readme-source [src/test.Rdata]
+files-r-data (source): r-data-without-readme-source [src/test.Rda]
diff --git a/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/debian/control.in b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/debian/control.in
new file mode 100644
index 0000000..c73927f
--- /dev/null
+++ b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/debian/control.in
@@ -0,0 +1,18 @@
+Source: [% $source %]
+Priority: optional
+Section: gnu-r
+Maintainer: [% $author %]
+Standards-Version: [% $standards_version %]
+Build-Depends: [% $build_depends %]
+Rules-Requires-Root: no
+
+Package: r-cran-isospecr
+Architecture: all
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: [% $description %]
+ This is a test package designed to exercise some feature or tag of
+ Lintian.  It is part of the Lintian test suite and may do very odd
+ things.  It should not be installed like a regular package.  It may
+ be an empty package.
+ .
+ This package has an incorrect Depends field.
diff --git a/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/debian/rules b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/debian/rules
new file mode 100644
index 0000000..68d9a36
--- /dev/null
+++ b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+%:
+	dh $@ --buildsystem R
diff --git a/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/fill-values b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/fill-values
new file mode 100644
index 0000000..569ce10
--- /dev/null
+++ b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/fill-values
@@ -0,0 +1,5 @@
+Skeleton: upload-non-native
+Testname: lacks-depends-on-r-api
+Description: Ships R site library but lacks Depends on r-api-N
+Package-Architecture: all
+Extra-Build-Depends: dh-r
diff --git a/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/orig/DESCRIPTION b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/orig/DESCRIPTION
new file mode 100644
index 0000000..62f6ec8
--- /dev/null
+++ b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/build-spec/orig/DESCRIPTION
@@ -0,0 +1,21 @@
+Encoding: UTF-8
+Package: IsoSpecR
+Type: Package
+Title: The IsoSpec Algorithm
+Version: 2.0.1
+Date: 2019-05-21
+Author: Mateusz Krzysztof Lacki and Michal Startek
+Maintainer: Matteo Lacki <matteo.lacki@gmail.com>
+Description: IsoSpec is a fine structure calculator used for obtaining the most
+    probable masses of a chemical compound given the frequencies of the composing
+    isotopes and their masses. It finds the smallest set of isotopologues with
+    a given probability. The probability is assumed to be that of the product of
+    multinomial distributions, each corresponding to one particular element and
+    parametrized by the frequencies of finding these elements in nature. These
+    numbers are supplied by IUPAC - the International Union of Pure and Applied
+    Chemistry.
+License: BSD_2_clause + file LICENCE
+URL: http://matteolacki.github.io/IsoSpec/
+Depends:
+    R (>= 3.0.0)
+NeedsCompilation: no
diff --git a/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/eval/desc b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/eval/desc
new file mode 100644
index 0000000..8999e6a
--- /dev/null
+++ b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/eval/desc
@@ -0,0 +1,4 @@
+Testname: lacks-depends-on-r-api
+Check: languages/r/site-library
+See-Also:
+ https://wiki.debian.org/Teams/r-pkg-team
diff --git a/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/eval/hints b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/eval/hints
new file mode 100644
index 0000000..473fb96
--- /dev/null
+++ b/t/recipes/checks/languages/r/site-library/lacks-depends-on-r-api/eval/hints
@@ -0,0 +1,2 @@
+r-cran-isospecr (binary): ships-r-site-library IsoSpecR
+r-cran-isospecr (binary): requires-r-api