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-rw-r--r--EXAMPLES.rst (renamed from EXAMPLES)62
1 files changed, 26 insertions, 36 deletions
diff --git a/EXAMPLES b/EXAMPLES.rst
index 5a787c3..1f47ced 100644
--- a/EXAMPLES
+++ b/EXAMPLES.rst
@@ -29,7 +29,6 @@ Documentation using the alabaster theme
* `Jinja <https://jinja.palletsprojects.com/>`__
* `Lino <https://www.lino-framework.org/>`__ (customized)
* `marbl <https://getmarbl.readthedocs.io/>`__
-* `MDAnalysis <https://www.mdanalysis.org/docs/>`__ (customized)
* `MeshPy <https://documen.tician.de/meshpy/>`__
* `Molecule <https://molecule.readthedocs.io/>`__
* `Momotor LTI <https://momotor.org/doc/lti/canvas/>`__
@@ -61,18 +60,17 @@ Documentation using the classic theme
* `Buildbot <https://docs.buildbot.net/latest/>`__
* `CMake <https://cmake.org/documentation/>`__ (customized)
* `Chaco <https://docs.enthought.com/chaco/>`__ (customized)
-* `Cormoran <http://cormoran.nhopkg.org/docs/>`__
* `DEAP <https://deap.readthedocs.io/>`__ (customized)
* `Director <https://pythonhosted.org/director/>`__
-* `EZ-Draw <https://pageperso.lif.univ-mrs.fr/~edouard.thiel/ez-draw/doc/en/html/ez-manual.html>`__ (customized)
+* `EZ-Draw <https://pageperso.lis-lab.fr/~edouard.thiel/ez-draw/doc/en/html/ez-manual.html>`__ (customized)
* `Generic Mapping Tools (GMT) <https://gmt.soest.hawaii.edu/doc/latest/>`__ (customized)
* `Genomedata <https://noble.gs.washington.edu/proj/genomedata/doc/1.3.3/>`__
-* `GetFEM++ <https://getfem.org/>`__ (customized)
+* `GetFEM <https://getfem.org/>`__ (customized)
* `Glasgow Haskell Compiler <https://downloads.haskell.org/~ghc/latest/docs/html/users_guide/>`__ (customized)
-* `Grok <http://grok.zope.org/doc/current/>`__ (customized)
+* `Grok <https://web.archive.org/web/20230708190705/http://grok.zope.org/doc/current/>`__ (customized)
* `GROMACS <https://manual.gromacs.org/documentation/>`__
* `GSL Shell <https://www.nongnu.org/gsl-shell/>`__
-* `Hands-on Python Tutorial <http://anh.cs.luc.edu/python/hands-on/3.1/handsonHtml/>`__
+* `Hands-on Python Tutorial <http://anh.cs.luc.edu:80/python/hands-on/3.1/handsonHtml/>`__
* `Kaa <https://freevo.github.io/kaa-base/>`__ (customized)
* `Leo <https://leoeditor.com/>`__ (customized)
* `Mayavi <https://docs.enthought.com/mayavi/mayavi/>`__ (customized)
@@ -80,33 +78,31 @@ Documentation using the classic theme
* `mpmath <https://mpmath.org/doc/current/>`__
* `OpenCV <https://docs.opencv.org/>`__ (customized)
* `OpenEXR <https://excamera.com/articles/26/doc/index.html>`__
-* `OpenGDA <http://www.opengda.org/documentation/>`__
+* `OpenGDA <https://alfred.diamond.ac.uk/documentation/>`__
* `phpDocumentor <https://docs.phpdoc.org/>`__ (customized)
* `Plone <https://docs.plone.org/>`__ (customized)
* `PyEMD <https://pyemd.readthedocs.io/>`__
-* `Pyevolve <http://pyevolve.sourceforge.net/>`__
+* `Pyevolve <https://pyevolve.sourceforge.net/>`__
* `Pygame <https://www.pygame.org/docs/>`__ (customized)
* `PyMQI <https://dsuch.github.io/pymqi/>`__
-* `PyQt4 <http://pyqt.sourceforge.net/Docs/PyQt4/>`__ (customized)
-* `PyQt5 <http://pyqt.sourceforge.net/Docs/PyQt5/>`__ (customized)
+* `PyQt4 <https://pyqt.sourceforge.net/Docs/PyQt4/>`__ (customized)
+* `PyQt5 <https://pyqt.sourceforge.net/Docs/PyQt5/>`__ (customized)
* `Python 2 <https://docs.python.org/2/>`__
* `Python 3 <https://docs.python.org/3/>`__ (customized)
* `Python Packaging Authority <https://www.pypa.io/>`__ (customized)
-* `Ring programming language <http://ring-lang.sourceforge.net/doc/>`__ (customized)
+* `Ring programming language <https://ring-lang.sourceforge.net/doc/>`__ (customized)
* `SageMath <https://doc.sagemath.org/>`__ (customized)
* `Segway <https://noble.gs.washington.edu/proj/segway/doc/1.1.0/segway.html>`__
-* `simuPOP <http://simupop.sourceforge.net/manual_release/build/userGuide.html>`__ (customized)
-* `Sprox <http://sprox.org/>`__ (customized)
+* `simuPOP <https://simupop.sourceforge.net/manual_release/build/userGuide.html>`__ (customized)
* `SymPy <https://docs.sympy.org/>`__
* `TurboGears <https://turbogears.readthedocs.io/>`__ (customized)
* `tvtk <https://docs.enthought.com/mayavi/tvtk/>`__
* `Varnish <https://www.varnish-cache.org/docs/>`__ (customized, alabaster for index)
* `Waf <https://waf.io/apidocs/>`__
* `wxPython Phoenix <https://wxpython.org/Phoenix/docs/html/main.html>`__ (customized)
-* `Yum <http://yum.baseurl.org/api/yum/>`__
* `z3c <https://www.ibiblio.org/paulcarduner/z3ctutorial/>`__
* `zc.async <https://pythonhosted.org/zc.async/>`__ (customized)
-* `Zope <https://docs.zope.org/zope2/>`__ (customized)
+* `Zope <https://www.zope.dev/>`__ (customized)
Documentation using the sphinxdoc theme
---------------------------------------
@@ -115,16 +111,15 @@ Documentation using the sphinxdoc theme
* `cartopy <https://scitools.org.uk/cartopy/docs/latest/>`__
* `Jython <https://jython.readthedocs.io/>`__
* `LLVM <https://llvm.org/docs/>`__
-* `MDAnalysis Tutorial <https://www.mdanalysis.org/MDAnalysisTutorial/>`__
* `PyCantonese <https://pycantonese.org/>`__
* `Pyre <https://pyre.readthedocs.io/>`__
* `pySPACE <https://pyspace.github.io/pyspace/>`__
-* `Pysparse <http://pysparse.sourceforge.net/>`__
-* `PyTango <https://www.esrf.eu/computing/cs/tango/tango_doc/kernel_doc/pytango/latest/>`__
+* `Pysparse <https://pysparse.sourceforge.net/>`__
+* `PyTango <https://pytango.readthedocs.io>`__
* `Python Wild Magic <https://vmlaker.github.io/pythonwildmagic/>`__ (customized)
* `RDKit <https://www.rdkit.org/docs/>`__
-* `Reteisi <http://www.reteisi.org/contents.html>`__ (customized)
-* `Sqlkit <http://sqlkit.argolinux.org/>`__ (customized)
+* `Reteisi <https://www.reteisi.org/contents.html>`__ (customized)
+* `Sqlkit <https://sqlkit.argolinux.org/>`__ (customized)
* `Turbulenz <http://docs.turbulenz.com/>`__
Documentation using the nature theme
@@ -136,12 +131,11 @@ Documentation using the nature theme
* `libLAS <https://liblas.org/>`__ (customized)
* `Lmod <https://lmod.readthedocs.io/>`__
* `MapServer <https://mapserver.org/>`__ (customized)
-* `pyglet <https://pyglet.readthedocs.io/>`__ (customized)
* `PyWavelets <https://pywavelets.readthedocs.io/>`__
* `Setuptools <https://setuptools.readthedocs.io/>`__
* `Spring Python <https://docs.spring.io/spring-python/1.2.x/sphinx/html/>`__
* `StatsModels <https://www.statsmodels.org/>`__ (customized)
-* `Sylli <http://sylli.sourceforge.net/>`__
+* `Sylli <https://sylli.sourceforge.net/>`__
Documentation using another builtin theme
-----------------------------------------
@@ -191,7 +185,6 @@ Documentation using sphinx_rtd_theme
* `dj-stripe <https://dj-stripe.readthedocs.io/>`__
* `edX <https://docs.edx.org/>`__
* `Electrum <https://docs.electrum.org/>`__
-* `Elemental <https://libelemental.org/documentation/dev/>`__
* `ESWP3 <https://eswp3.readthedocs.io/>`__
* `Ethereum Homestead <https://www.ethdocs.org/>`__
* `Exhale <https://exhale.readthedocs.io/>`__
@@ -210,7 +203,6 @@ Documentation using sphinx_rtd_theme
* `HDF5 for Python (h5py) <https://docs.h5py.org/>`__
* `HyperKitty <https://hyperkitty.readthedocs.io/>`__
* `Hyperledger Fabric <https://hyperledger-fabric.readthedocs.io/>`__
-* `Hyperledger Sawtooth <https://sawtooth.hyperledger.org/docs/>`__
* `IdentityServer <https://docs.identityserver.io/>`__
* `Idris <https://docs.idris-lang.org/>`__
* `Inkscape <https://inkscape-manuals.readthedocs.io/>`__ (customized)
@@ -225,7 +217,7 @@ Documentation using sphinx_rtd_theme
* `Linux kernel <https://www.kernel.org/doc/html/latest/index.html>`__
* `Mailman <https://docs.list.org/>`__
* `MathJax <https://docs.mathjax.org/>`__
-* `MDTraj <http://mdtraj.org/>`__ (customized)
+* `MDTraj <https://mdtraj.org/>`__ (customized)
* `Mesa 3D <https://docs.mesa3d.org/>`__
* `micca - MICrobial Community Analysis <https://micca.readthedocs.io/>`__
* `MicroPython <https://docs.micropython.org/>`__
@@ -257,6 +249,7 @@ Documentation using sphinx_rtd_theme
* `PROS <https://pros.cs.purdue.edu/v5/>`__ (customized)
* `Pweave <https://mpastell.com/pweave/>`__
* `pyca/cryptograhpy <https://cryptography.io/>`__
+* `pyglet <https://pyglet.readthedocs.io/>`__
* `PyNaCl <https://pynacl.readthedocs.io/>`__
* `pyOpenSSL <https://www.pyopenssl.org/>`__
* `PyPy <https://doc.pypy.org/>`__
@@ -268,8 +261,9 @@ Documentation using sphinx_rtd_theme
* `Free your information from their silos (French) <https://redaction-technique.org/>`__ (customized)
* `Releases Sphinx extension <https://releases.readthedocs.io/>`__
* `Qtile <https://docs.qtile.org/>`__
-* `Quex <http://quex.sourceforge.net/doc/html/main.html>`__
+* `Quex <https://quex.sourceforge.net/doc/html/main.html>`__
* `QuTiP <https://qutip.org/docs/latest/>`__
+* `Sawtooth <https://sawtooth.splinter.dev/docs>`__
* `Scapy <https://scapy.readthedocs.io/>`__
* `SimGrid <https://simgrid.org/doc/latest/>`__
* `SimPy <https://simpy.readthedocs.io/>`__
@@ -283,12 +277,11 @@ Documentation using sphinx_rtd_theme
* `Sphinx with Github Webpages <https://runawayhorse001.github.io/SphinxGithub>`__
* `SpotBugs <https://spotbugs.readthedocs.io/>`__
* `StarUML <https://docs.staruml.io/>`__
-* `Sublime Text Unofficial Documentation <http://docs.sublimetext.info/>`__
+* `Sublime Text Unofficial Documentation <https://docs.sublimetext.info/>`__
* `SunPy <https://docs.sunpy.org/>`__
* `Sylius <https://docs.sylius.com/>`__
* `Syncthing <https://docs.syncthing.net/>`__
* `Tango Controls <https://tango-controls.readthedocs.io/>`__ (customized)
-* `Topshelf <https://docs.topshelf-project.com/>`__
* `ThreatConnect <https://docs.threatconnect.com/>`__
* `TrueNAS <https://www.ixsystems.com/documentation/truenas/>`__ (customized)
* `Tuleap <https://tuleap.net/doc/en/>`__
@@ -381,12 +374,11 @@ Documentation using a custom theme or integrated in a website
* `ndnSIM <https://ndnsim.net/current/>`__
* `nose <https://nose.readthedocs.io/>`__
* `ns-3 <https://www.nsnam.org/documentation/>`__
-* `ObjectListView <http://objectlistview.sourceforge.net/python/>`__
+* `ObjectListView <https://objectlistview.sourceforge.net/python/>`__
* `OpenERP <https://doc.odoo.com/>`__
* `OpenCV <https://docs.opencv.org/>`__
* `Open Dylan <https://opendylan.org/>`__
-* `OpenLayers <http://docs.openlayers.org/>`__
-* `OpenTURNS <https://openturns.github.io/openturns/master/>`__
+* `OpenTURNS <https://openturns.github.io/openturns/latest/>`__
* `Open vSwitch <https://docs.openvswitch.org/>`__
* `PlatformIO <https://docs.platformio.org/>`__
* `Psycopg <https://www.psycopg.org/docs/>`__
@@ -407,7 +399,7 @@ Documentation using a custom theme or integrated in a website
* `Substance D <https://docs.pylonsproject.org/projects/substanced/>`__
* `Sulu <https://docs.sulu.io/>`__
* `SQLAlchemy <https://docs.sqlalchemy.org/>`__
-* `tinyTiM <http://tinytim.sourceforge.net/docs/2.0/>`__
+* `tinyTiM <https://tinytim.sourceforge.net/docs/2.0/>`__
* `Twisted <https://twistedmatrix.com/documents/current/>`__
* `Ubuntu Packaging Guide <https://packaging.ubuntu.com/html/>`__
* `WTForms <https://wtforms.readthedocs.io/>`__
@@ -415,7 +407,7 @@ Documentation using a custom theme or integrated in a website
Homepages and other non-documentation sites
-------------------------------------------
-* `Alan Crosswell's Using the Django REST Framework and DRF-JSONAPI <http://www.columbia.edu/~alan/django-jsonapi-training/>`__
+* `Alan Crosswell's Using the Django REST Framework and DRF-JSONAPI <https://www.columbia.edu/~alan/django-jsonapi-training/>`__
* `Arizona State University PHY494/PHY598/CHM598 Simulation approaches to Bio-and Nanophysics <https://becksteinlab.physics.asu.edu/pages/courses/2013/SimBioNano/>`__ (classic)
* `Benoit Boissinot <https://bboissin.appspot.com/>`__ (classic, customized)
* `EBI Cloud Consultancy Team <https://tsi-ccdoc.readthedocs.io/>`__ (sphinx_rtd_theme)
@@ -424,11 +416,9 @@ Homepages and other non-documentation sites
* `Institute for the Design of Advanced Energy Systems (IDAES) <https://idaes-pse.readthedocs.io/>`__ (sphinx_rtd_theme)
* `IDAES Examples <https://idaes.github.io/examples-pse/>`__ (sphinx_rtd_theme)
* `Lei Ma's Statistical Mechanics lecture notes <https://statisticalphysics.leima.is/>`__ (sphinx_bootstrap_theme)
-* `Loyola University Chicago CS Academic Programs <https://academics.cs.luc.edu/index.html>`__ (sphinx_rtd_theme, customized)
* `PyXLL <https://www.pyxll.com/>`__ (sphinx_bootstrap_theme, customized)
* `SciPy Cookbook <https://scipy-cookbook.readthedocs.io/>`__ (sphinx_rtd_theme)
* `Tech writer at work blog <https://documatt.com/blog/>`__ (custom theme)
-* `Thomas Cokelaer's Python, Sphinx and reStructuredText tutorials <https://thomas-cokelaer.info/tutorials/>`__ (standard)
* `UC Berkeley ME233 Advanced Control Systems II course <https://berkeley-me233.github.io/>`__ (sphinxdoc)
* `Željko Svedružić's Biomolecular Structure and Function Laboratory (BioSFLab) <https://svedruziclab.github.io/>`__ (sphinx_bootstrap_theme)
@@ -446,7 +436,7 @@ Books produced using Sphinx
* `"Learning System Programming with Go (Japanese)" <https://www.lambdanote.com/products/go>`__
* `"Mercurial: the definitive guide (Second edition)" <https://book.mercurial-scm.org/>`__
* `"Mithril -- The fastest clientside MVC (Japanese)" <https://www.oreilly.co.jp/books/9784873117447/>`__
-* `"Pioneers and Prominent Men of Utah" <http://pioneers.rstebbing.com/>`__
+* "Pioneers and Prominent Men of Utah"
* `"Pomodoro Technique Illustrated" (Japanese translation) <https://www.amazon.co.jp/dp/4048689525/>`__
* `"Professional Software Development" <https://mixmastamyk.bitbucket.io/pro_soft_dev/>`__
* `"Python Professional Programming" (in Japanese) <https://www.amazon.co.jp/dp/4798032948/>`__