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authorDaniel Baumann <daniel.baumann@progress-linux.org>2018-11-07 12:19:29 +0000
committerDaniel Baumann <daniel.baumann@progress-linux.org>2018-11-07 12:20:17 +0000
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treec1024acc5f6e508814b944d99f112259bb28b1be /database/README.md
parentNew upstream version 1.10.0+dfsg (diff)
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New upstream version 1.11.0+dfsgupstream/1.11.0+dfsg
Signed-off-by: Daniel Baumann <daniel.baumann@progress-linux.org>
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+# netdata database
+
+Although `netdata` does all its calculations using `long double`, it stores all values using
+a [custom-made 32-bit number](../libnetdata/storage_number/).
+
+So, for each dimension of a chart, netdata will need: `4 bytes for the value * the entries
+of its history`. It will not store any other data for each value in the time series database.
+Since all its values are stored in a time series with fixed step, the time each value
+corresponds can be calculated at run time, using the position of a value in the round robin database.
+
+The default history is 3.600 entries, thus it will need 14.4KB for each chart dimension.
+If you need 1.000 dimensions, they will occupy just 14.4MB.
+
+Of course, 3.600 entries is a very short history, especially if data collection frequency is set
+to 1 second. You will have just one hour of data.
+
+For a day of data and 1.000 dimensions, you will need: 86.400 seconds * 4 bytes * 1.000
+dimensions = 345MB of RAM.
+
+Currently the only option you have to lower this number is to use
+**[Memory Deduplication - Kernel Same Page Merging - KSM](#ksm)**.
+
+## Memory modes
+
+Currently netdata supports 5 memory modes:
+
+1. `ram`, data are purely in memory. Data are never saved on disk. This mode uses `mmap()` and
+ supports [KSM](#ksm).
+
+2. `save`, (the default) data are only in RAM while netdata runs and are saved to / loaded from
+ disk on netdata restart. It also uses `mmap()` and supports [KSM](#ksm).
+
+3. `map`, data are in memory mapped files. This works like the swap. Keep in mind though, this
+ will have a constant write on your disk. When netdata writes data on its memory, the Linux kernel
+ marks the related memory pages as dirty and automatically starts updating them on disk.
+ Unfortunately we cannot control how frequently this works. The Linux kernel uses exactly the
+ same algorithm it uses for its swap memory. Check below for additional information on running a
+ dedicated central netdata server. This mode uses `mmap()` but does not support [KSM](#ksm).
+
+4. `none`, without a database (collected metrics can only be streamed to another netdata).
+
+5. `alloc`, like `ram` but it uses `calloc()` and does not support [KSM](#ksm). This mode is the
+ fallback for all others except `none`.
+
+You can select the memory mode by editing netdata.conf and setting:
+
+```
+[global]
+ # ram, save (the default, save on exit, load on start), map (swap like)
+ memory mode = save
+
+ # the directory where data are saved
+ cache directory = /var/cache/netdata
+```
+
+## Running netdata in embedded devices
+
+Embedded devices usually have very limited RAM resources available.
+
+There are 2 settings for you to tweak:
+
+1. `update every`, which controls the data collection frequency
+2. `history`, which controls the size of the database in RAM
+
+By default `update every = 1` and `history = 3600`. This gives you an hour of data with per
+second updates.
+
+If you set `update every = 2` and `history = 1800`, you will still have an hour of data, but
+collected once every 2 seconds. This will **cut in half** both CPU and RAM resources consumed
+by netdata. Of course experiment a bit. On very weak devices you might have to use
+`update every = 5` and `history = 720` (still 1 hour of data, but 1/5 of the CPU and RAM resources).
+
+You can also disable [data collection plugins](../collectors) you don't need.
+Disabling such plugins will also free both CPU and RAM resources.
+
+## running a dedicated central netdata server
+
+netdata allows streaming data between netdata nodes. This allows us to have a central netdata
+server that will maintain the entire database for all nodes, and will also run health checks/alarms
+for all nodes.
+
+For this central netdata, memory size can be a problem. Fortunately, netdata supports several
+memory modes. What is interesting for this setup is `memory mode = map`.
+
+In this mode, the database of netdata is stored in memory mapped files. netdata continues to read
+and write the database in memory, but the kernel automatically loads and saves memory pages from/to
+disk.
+
+**We suggest _not_ to use this mode on nodes that run other applications.** There will always be
+dirty memory to be synced and this syncing process may influence the way other applications work.
+This mode however is ideal when we need a central netdata server that would normally need huge
+amounts of memory. Using memory mode `map` we can overcome all memory restrictions.
+
+There are a few kernel options that provide finer control on the way this syncing works. But before
+explaining them, a brief introduction of how netdata database works is needed.
+
+For each chart, netdata maps the following files:
+
+1. `chart/main.db`, this is the file that maintains chart information. Every time data are collected
+ for a chart, this is updated.
+
+2. `chart/dimension_name.db`, this is the file for each dimension. At its beginning there is a
+ header, followed by the round robin database where metrics are stored.
+
+So, every time netdata collects data, the following pages will become dirty:
+
+1. the chart file
+2. the header part of all dimension files
+3. if the collected metrics are stored far enough in the dimension file, another page will
+ become dirty, for each dimension
+
+Each page in Linux is 4KB. So, with 200 charts and 1000 dimensions, there will be 1200 to 2200 4KB
+pages dirty pages every second. Of course 1200 of them will always be dirty (the chart header and
+the dimensions headers) and 1000 will be dirty for about 1000 seconds (4 bytes per metric, 4KB per
+page, so 1000 seconds, or 16 minutes per page).
+
+Hopefully, the Linux kernel does not sync all these data every second. The frequency they are
+synced is controlled by `/proc/sys/vm/dirty_expire_centisecs` or the
+`sysctl` `vm.dirty_expire_centisecs`. The default on most systems is 3000 (30 seconds).
+
+On a busy server centralizing metrics from 20+ servers you will experience this:
+
+![image](https://cloud.githubusercontent.com/assets/2662304/23834750/429ab0dc-0764-11e7-821a-d7908bc881ac.png)
+
+As you can see, there is quite some stress (this is `iowait`) every 30 seconds.
+
+A simple solution is to increase this time to 10 minutes (60000). This is the same system
+with this setting in 10 minutes:
+
+![image](https://cloud.githubusercontent.com/assets/2662304/23834784/d2304f72-0764-11e7-8389-fb830ffd973a.png)
+
+Of course, setting this to 10 minutes means that data on disk might be up to 10 minutes old if you
+get an abnormal shutdown.
+
+There are 2 more options to tweak:
+
+1. `dirty_background_ratio`, by default `10`.
+2. `dirty_ratio`, by default `20`.
+
+These control the amount of memory that should be dirty for disk syncing to be triggered.
+On dedicated netdata servers, you can use: `80` and `90` respectively, so that all RAM is given
+to netdata.
+
+With these settings, you can expect a little `iowait` spike once every 10 minutes and in case
+of system crash, data on disk will be up to 10 minutes old.
+
+![image](https://cloud.githubusercontent.com/assets/2662304/23835030/ba4bf506-0768-11e7-9bc6-3b23e080c69f.png)
+
+To have these settings automatically applied on boot, create the file `/etc/sysctl.d/netdata-memory.conf` with these contents:
+
+```
+vm.dirty_expire_centisecs = 60000
+vm.dirty_background_ratio = 80
+vm.dirty_ratio = 90
+vm.dirty_writeback_centisecs = 0
+```
+
+## KSM
+
+Netdata offers all its round robin database to kernel for deduplication.
+
+In the past KSM has been criticized for consuming a lot of CPU resources.
+Although this is true when KSM is used for deduplicating certain applications, it is not true with
+netdata, since the netdata memory is written very infrequently (if you have 24 hours of metrics in
+netdata, each byte at the in-memory database will be updated just once per day).
+
+KSM is a solution that will provide 60+% memory savings to netdata.
+
+#### Enable KSM in kernel
+
+You need to run a kernel compiled with:
+
+```sh
+CONFIG_KSM=y
+```
+
+When KSM is enabled at the kernel is just available for the user to enable it.
+
+So, if you build a kernel with `CONFIG_KSM=y` you will just get a few files in `/sys/kernel/mm/ksm`. Nothing else happens. There is no performance penalty (apart I guess from the memory this code occupies into the kernel).
+
+The files that `CONFIG_KSM=y` offers include:
+
+- `/sys/kernel/mm/ksm/run` by default `0`. You have to set this to `1` for the kernel to spawn `ksmd`.
+- `/sys/kernel/mm/ksm/sleep_millisecs`, by default `20`. The frequency ksmd should evaluate memory for deduplication.
+- `/sys/kernel/mm/ksm/pages_to_scan`, by default `100`. The amount of pages ksmd will evaluate on each run.
+
+So, by default `ksmd` is just disabled. It will not harm performance and the user/admin can control the CPU resources he/she is willing `ksmd` to use.
+
+#### Run `ksmd` kernel daemon
+
+To activate / run `ksmd` you need to run:
+
+```sh
+echo 1 >/sys/kernel/mm/ksm/run
+echo 1000 >/sys/kernel/mm/ksm/sleep_millisecs
+```
+
+With these settings ksmd does not even appear in the running process list (it will run once per second and evaluate 100 pages for de-duplication).
+
+Put the above lines in your boot sequence (`/etc/rc.local` or equivalent) to have `ksmd` run at boot.
+
+## Monitoring Kernel Memory de-duplication performance
+
+Netdata will create charts for kernel memory de-duplication performance, like this:
+
+![image](https://cloud.githubusercontent.com/assets/2662304/11998786/eb23ae54-aab6-11e5-94d4-e848e8a5c56a.png)