Merging upstream version 2.13.0.

Signed-off-by: Daniel Baumann <daniel.baumann@progress-linux.org>

27 files changed, 1249 insertions, 80 deletions

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 214c285..78cbfac 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.4.0
+    rev: v4.0.1
     hooks:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
@@ -12,25 +12,25 @@ repos:
     -   id: requirements-txt-fixer
     -   id: double-quote-string-fixer
 -   repo: https://github.com/PyCQA/flake8
-    rev: 3.9.0
+    rev: 3.9.2
     hooks:
     -   id: flake8
         additional_dependencies: [flake8-typing-imports==1.10.0]
 -   repo: https://github.com/pre-commit/mirrors-autopep8
-    rev: v1.5.6
+    rev: v1.5.7
     hooks:
     -   id: autopep8
 -   repo: https://github.com/pre-commit/pre-commit
-    rev: v2.12.1
+    rev: v2.13.0
     hooks:
     -   id: validate_manifest
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v2.12.0
+    rev: v2.16.0
     hooks:
     -   id: pyupgrade
         args: [--py36-plus]
 -   repo: https://github.com/asottile/reorder_python_imports
-    rev: v2.4.0
+    rev: v2.5.0
     hooks:
     -   id: reorder-python-imports
         args: [--py3-plus]
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 2f154c4..e47a1c5 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,26 @@
+2.13.0 - 2021-05-21
+===================
+
+### Features
+- Setting `SKIP=...` skips installation as well.
+    - #1875 PR by @asottile.
+    - pre-commit-ci/issues#53 issue by @TylerYep.
+- Attempt to mount from host with docker-in-docker.
+    - #1888 PR by @okainov.
+    - #1387 issue by @okainov.
+- Enable `repo: local` for `r` hooks.
+    - #1878 PR by @lorenzwalthert.
+- Upgrade `ruby-build` and `rbenv`.
+    - #1913 PR by @jalessio.
+
+### Fixes
+- Better detect `r` packages.
+    - #1898 PR by @lorenzwalthert.
+- Avoid warnings with mismatched `renv` versions.
+    - #1841 PR by @lorenzwalthert.
+- Reproducibly produce ruby tar resources.
+    - #1915 PR by @asottile.
+
 2.12.1 - 2021-04-16
 ===================
 
@@ -1444,7 +1467,7 @@ that have helped us get this far!
 
 0.13.1 - 2017-02-16
 ===================
-- Fix dummy gem for ruby local hooks
+- Fix placeholder gem for ruby local hooks
 
 0.13.0 - 2017-02-16
 ===================
diff --git a/pre_commit/commands/run.py b/pre_commit/commands/run.py
index 05c3268..0fef50d 100644
--- a/pre_commit/commands/run.py
+++ b/pre_commit/commands/run.py
@@ -271,11 +271,11 @@ def _get_diff() -> bytes:
 def _run_hooks(
         config: Dict[str, Any],
         hooks: Sequence[Hook],
+        skips: Set[str],
         args: argparse.Namespace,
         environ: MutableMapping[str, str],
 ) -> int:
     """Actually run the hooks."""
-    skips = _get_skips(environ)
     cols = _compute_cols(hooks)
     classifier = Classifier.from_config(
         _all_filenames(args), config['files'], config['exclude'],
@@ -403,9 +403,11 @@ def run(
             )
             return 1
 
-        install_hook_envs(hooks, store)
+        skips = _get_skips(environ)
+        to_install = [hook for hook in hooks if hook.id not in skips]
+        install_hook_envs(to_install, store)
 
-        return _run_hooks(config, hooks, args, environ)
+        return _run_hooks(config, hooks, skips, args, environ)
 
     # https://github.com/python/mypy/issues/7726
     raise AssertionError('unreachable')
diff --git a/pre_commit/languages/docker.py b/pre_commit/languages/docker.py
index 9d30568..5b21ec9 100644
--- a/pre_commit/languages/docker.py
+++ b/pre_commit/languages/docker.py
@@ -1,5 +1,7 @@
 import hashlib
+import json
 import os
+import socket
 from typing import Sequence
 from typing import Tuple
 
@@ -8,6 +10,7 @@ from pre_commit.hook import Hook
 from pre_commit.languages import helpers
 from pre_commit.prefix import Prefix
 from pre_commit.util import clean_path_on_failure
+from pre_commit.util import cmd_output_b
 
 ENVIRONMENT_DIR = 'docker'
 PRE_COMMIT_LABEL = 'PRE_COMMIT'
@@ -15,6 +18,34 @@ get_default_version = helpers.basic_get_default_version
 healthy = helpers.basic_healthy
 
 
+def _is_in_docker() -> bool:
+    try:
+        with open('/proc/1/cgroup', 'rb') as f:
+            return b'docker' in f.read()
+    except FileNotFoundError:
+        return False
+
+
+def _get_docker_path(path: str) -> str:
+    if not _is_in_docker():
+        return path
+    hostname = socket.gethostname()
+
+    _, out, _ = cmd_output_b('docker', 'inspect', hostname)
+
+    container, = json.loads(out)
+    for mount in container['Mounts']:
+        src_path = mount['Source']
+        to_path = mount['Destination']
+        if os.path.commonpath((path, to_path)) == to_path:
+            # So there is something in common,
+            # and we can proceed remapping it
+            return path.replace(to_path, src_path)
+    # we're in Docker, but the path is not mounted, cannot really do anything,
+    # so fall back to original path
+    return path
+
+
 def md5(s: str) -> str:  # pragma: win32 no cover
     return hashlib.md5(s.encode()).hexdigest()
 
@@ -73,7 +104,7 @@ def docker_cmd() -> Tuple[str, ...]:  # pragma: win32 no cover
         # https://docs.docker.com/engine/reference/commandline/run/#mount-volumes-from-container-volumes-from
         # The `Z` option tells Docker to label the content with a private
         # unshared label. Only the current container can use a private volume.
-        '-v', f'{os.getcwd()}:/src:rw,Z',
+        '-v', f'{_get_docker_path(os.getcwd())}:/src:rw,Z',
         '--workdir', '/src',
     )
 
diff --git a/pre_commit/languages/r.py b/pre_commit/languages/r.py
index 83e6000..d573775 100644
--- a/pre_commit/languages/r.py
+++ b/pre_commit/languages/r.py
@@ -15,6 +15,7 @@ from pre_commit.util import clean_path_on_failure
 from pre_commit.util import cmd_output_b
 
 ENVIRONMENT_DIR = 'renv'
+RSCRIPT_OPTS = ('--no-save', '--no-restore', '--no-site-file', '--no-environ')
 get_default_version = helpers.basic_get_default_version
 healthy = helpers.basic_healthy
 
@@ -39,14 +40,19 @@ def _get_env_dir(prefix: Prefix, version: str) -> str:
     return prefix.path(helpers.environment_dir(ENVIRONMENT_DIR, version))
 
 
-def _prefix_if_file_entry(
+def _prefix_if_non_local_file_entry(
     entry: Sequence[str],
     prefix: Prefix,
+    src: str,
 ) -> Sequence[str]:
     if entry[1] == '-e':
         return entry[1:]
     else:
-        return (prefix.path(entry[1]),)
+        if src == 'local':
+            path = entry[1]
+        else:
+            path = prefix.path(entry[1])
+        return (path,)
 
 
 def _entry_validate(entry: Sequence[str]) -> None:
@@ -69,13 +75,12 @@ def _entry_validate(entry: Sequence[str]) -> None:
 
 
 def _cmd_from_hook(hook: Hook) -> Tuple[str, ...]:
-    opts = ('--no-save', '--no-restore', '--no-site-file', '--no-environ')
     entry = shlex.split(hook.entry)
     _entry_validate(entry)
 
     return (
-        *entry[:1], *opts,
-        *_prefix_if_file_entry(entry, hook.prefix),
+        *entry[:1], *RSCRIPT_OPTS,
+        *_prefix_if_non_local_file_entry(entry, hook.prefix, hook.src),
         *hook.args,
     )
 
@@ -89,29 +94,32 @@ def install_environment(
     with clean_path_on_failure(env_dir):
         os.makedirs(env_dir, exist_ok=True)
         shutil.copy(prefix.path('renv.lock'), env_dir)
+        shutil.copytree(prefix.path('renv'), os.path.join(env_dir, 'renv'))
         cmd_output_b(
             'Rscript', '--vanilla', '-e',
             f"""\
             prefix_dir <- {prefix.prefix_dir!r}
-            missing_pkgs <- setdiff(
-                "renv", unname(installed.packages()[, "Package"])
-            )
             options(
                 repos = c(CRAN = "https://cran.rstudio.com"),
                 renv.consent = TRUE
             )
-            install.packages(missing_pkgs)
-            renv::activate()
+            source("renv/activate.R")
             renv::restore()
             activate_statement <- paste0(
-              'renv::activate("', file.path(getwd()), '"); '
+              'suppressWarnings({{',
+              'old <- setwd("', getwd(), '"); ',
+              'source("renv/activate.R"); ',
+              'setwd(old); ',
+              'renv::load("', getwd(), '");}})'
             )
             writeLines(activate_statement, 'activate.R')
-            is_package <- tryCatch({{
-                content_desc <- read.dcf(file.path(prefix_dir, 'DESCRIPTION'))
-                suppressWarnings(unname(content_desc[,'Type']) == "Package")
-                }},
-                error = function(...) FALSE
+            is_package <- tryCatch(
+              {{
+                  path_desc <- file.path(prefix_dir, 'DESCRIPTION')
+                  suppressWarnings(desc <- read.dcf(path_desc))
+                  "Package" %in% colnames(desc)
+              }},
+              error = function(...) FALSE
             )
             if (is_package) {{
                 renv::install(prefix_dir)
@@ -120,12 +128,13 @@ def install_environment(
             cwd=env_dir,
         )
         if additional_dependencies:
-            cmd_output_b(
-                'Rscript', '-e',
-                'renv::install(commandArgs(trailingOnly = TRUE))',
-                *additional_dependencies,
-                cwd=env_dir,
-            )
+            with in_env(prefix, version):
+                cmd_output_b(
+                    'Rscript', *RSCRIPT_OPTS, '-e',
+                    'renv::install(commandArgs(trailingOnly = TRUE))',
+                    *additional_dependencies,
+                    cwd=env_dir,
+                )
 
 
 def run_hook(
diff --git a/pre_commit/resources/empty_template_LICENSE.renv b/pre_commit/resources/empty_template_LICENSE.renv
new file mode 100644
index 0000000..253c5d1
--- /dev/null
+++ b/pre_commit/resources/empty_template_LICENSE.renv
@@ -0,0 +1,7 @@
+Copyright 2021 RStudio, PBC
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
diff --git a/pre_commit/resources/empty_template_Makefile.PL b/pre_commit/resources/empty_template_Makefile.PL
index ac75fe5..45a0ba3 100644
--- a/pre_commit/resources/empty_template_Makefile.PL
+++ b/pre_commit/resources/empty_template_Makefile.PL
@@ -1,6 +1,6 @@
 use ExtUtils::MakeMaker;
 
 WriteMakefile(
-    NAME => "PreCommitDummy",
+    NAME => "PreCommitPlaceholder",
     VERSION => "0.0.1",
 );
diff --git a/pre_commit/resources/empty_template_activate.R b/pre_commit/resources/empty_template_activate.R
new file mode 100644
index 0000000..d8d092c
--- /dev/null
+++ b/pre_commit/resources/empty_template_activate.R
@@ -0,0 +1,440 @@
+
+local({
+
+  # the requested version of renv
+  version <- "0.12.5"
+
+  # the project directory
+  project <- getwd()
+
+  # avoid recursion
+  if (!is.na(Sys.getenv("RENV_R_INITIALIZING", unset = NA)))
+    return(invisible(TRUE))
+
+  # signal that we're loading renv during R startup
+  Sys.setenv("RENV_R_INITIALIZING" = "true")
+  on.exit(Sys.unsetenv("RENV_R_INITIALIZING"), add = TRUE)
+
+  # signal that we've consented to use renv
+  options(renv.consent = TRUE)
+
+  # load the 'utils' package eagerly -- this ensures that renv shims, which
+  # mask 'utils' packages, will come first on the search path
+  library(utils, lib.loc = .Library)
+
+  # check to see if renv has already been loaded
+  if ("renv" %in% loadedNamespaces()) {
+
+    # if renv has already been loaded, and it's the requested version of renv,
+    # nothing to do
+    spec <- .getNamespaceInfo(.getNamespace("renv"), "spec")
+    if (identical(spec[["version"]], version))
+      return(invisible(TRUE))
+
+    # otherwise, unload and attempt to load the correct version of renv
+    unloadNamespace("renv")
+
+  }
+
+  # load bootstrap tools
+  bootstrap <- function(version, library) {
+
+    # attempt to download renv
+    tarball <- tryCatch(renv_bootstrap_download(version), error = identity)
+    if (inherits(tarball, "error"))
+      stop("failed to download renv ", version)
+
+    # now attempt to install
+    status <- tryCatch(renv_bootstrap_install(version, tarball, library), error = identity)
+    if (inherits(status, "error"))
+      stop("failed to install renv ", version)
+
+  }
+
+  renv_bootstrap_tests_running <- function() {
+    getOption("renv.tests.running", default = FALSE)
+  }
+
+  renv_bootstrap_repos <- function() {
+
+    # check for repos override
+    repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA)
+    if (!is.na(repos))
+      return(repos)
+
+    # if we're testing, re-use the test repositories
+    if (renv_bootstrap_tests_running())
+      return(getOption("renv.tests.repos"))
+
+    # retrieve current repos
+    repos <- getOption("repos")
+
+    # ensure @CRAN@ entries are resolved
+    repos[repos == "@CRAN@"] <- "https://cloud.r-project.org"
+
+    # add in renv.bootstrap.repos if set
+    default <- c(CRAN = "https://cloud.r-project.org")
+    extra <- getOption("renv.bootstrap.repos", default = default)
+    repos <- c(repos, extra)
+
+    # remove duplicates that might've snuck in
+    dupes <- duplicated(repos) | duplicated(names(repos))
+    repos[!dupes]
+
+  }
+
+  renv_bootstrap_download <- function(version) {
+
+    # if the renv version number has 4 components, assume it must
+    # be retrieved via github
+    nv <- numeric_version(version)
+    components <- unclass(nv)[[1]]
+
+    methods <- if (length(components) == 4L) {
+      list(
+        renv_bootstrap_download_github
+      )
+    } else {
+      list(
+        renv_bootstrap_download_cran_latest,
+        renv_bootstrap_download_cran_archive
+      )
+    }
+
+    for (method in methods) {
+      path <- tryCatch(method(version), error = identity)
+      if (is.character(path) && file.exists(path))
+        return(path)
+    }
+
+    stop("failed to download renv ", version)
+
+  }
+
+  renv_bootstrap_download_impl <- function(url, destfile) {
+
+    mode <- "wb"
+
+    # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715
+    fixup <-
+      Sys.info()[["sysname"]] == "Windows" &&
+      substring(url, 1L, 5L) == "file:"
+
+    if (fixup)
+      mode <- "w+b"
+
+    utils::download.file(
+      url      = url,
+      destfile = destfile,
+      mode     = mode,
+      quiet    = TRUE
+    )
+
+  }
+
+  renv_bootstrap_download_cran_latest <- function(version) {
+
+    repos <- renv_bootstrap_download_cran_latest_find(version)
+
+    message("* Downloading renv ", version, " from CRAN ... ", appendLF = FALSE)
+
+    info <- tryCatch(
+      utils::download.packages(
+        pkgs = "renv",
+        repos = repos,
+        destdir = tempdir(),
+        quiet = TRUE
+      ),
+      condition = identity
+    )
+
+    if (inherits(info, "condition")) {
+      message("FAILED")
+      return(FALSE)
+    }
+
+    message("OK")
+    info[1, 2]
+
+  }
+
+  renv_bootstrap_download_cran_latest_find <- function(version) {
+
+    all <- renv_bootstrap_repos()
+
+    for (repos in all) {
+
+      db <- tryCatch(
+        as.data.frame(
+          x = utils::available.packages(repos = repos),
+          stringsAsFactors = FALSE
+        ),
+        error = identity
+      )
+
+      if (inherits(db, "error"))
+        next
+
+      entry <- db[db$Package %in% "renv" & db$Version %in% version, ]
+      if (nrow(entry) == 0)
+        next
+
+      return(repos)
+
+    }
+
+    fmt <- "renv %s is not available from your declared package repositories"
+    stop(sprintf(fmt, version))
+
+  }
+
+  renv_bootstrap_download_cran_archive <- function(version) {
+
+    name <- sprintf("renv_%s.tar.gz", version)
+    repos <- renv_bootstrap_repos()
+    urls <- file.path(repos, "src/contrib/Archive/renv", name)
+    destfile <- file.path(tempdir(), name)
+
+    message("* Downloading renv ", version, " from CRAN archive ... ", appendLF = FALSE)
+
+    for (url in urls) {
+
+      status <- tryCatch(
+        renv_bootstrap_download_impl(url, destfile),
+        condition = identity
+      )
+
+      if (identical(status, 0L)) {
+        message("OK")
+        return(destfile)
+      }
+
+    }
+
+    message("FAILED")
+    return(FALSE)
+
+  }
+
+  renv_bootstrap_download_github <- function(version) {
+
+    enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE")
+    if (!identical(enabled, "TRUE"))
+      return(FALSE)
+
+    # prepare download options
+    pat <- Sys.getenv("GITHUB_PAT")
+    if (nzchar(Sys.which("curl")) && nzchar(pat)) {
+      fmt <- "--location --fail --header \"Authorization: token %s\""
+      extra <- sprintf(fmt, pat)
+      saved <- options("download.file.method", "download.file.extra")
+      options(download.file.method = "curl", download.file.extra = extra)
+      on.exit(do.call(base::options, saved), add = TRUE)
+    } else if (nzchar(Sys.which("wget")) && nzchar(pat)) {
+      fmt <- "--header=\"Authorization: token %s\""
+      extra <- sprintf(fmt, pat)
+      saved <- options("download.file.method", "download.file.extra")
+      options(download.file.method = "wget", download.file.extra = extra)
+      on.exit(do.call(base::options, saved), add = TRUE)
+    }
+
+    message("* Downloading renv ", version, " from GitHub ... ", appendLF = FALSE)
+
+    url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version)
+    name <- sprintf("renv_%s.tar.gz", version)
+    destfile <- file.path(tempdir(), name)
+
+    status <- tryCatch(
+      renv_bootstrap_download_impl(url, destfile),
+      condition = identity
+    )
+
+    if (!identical(status, 0L)) {
+      message("FAILED")
+      return(FALSE)
+    }
+
+    message("OK")
+    return(destfile)
+
+  }
+
+  renv_bootstrap_install <- function(version, tarball, library) {
+
+    # attempt to install it into project library
+    message("* Installing renv ", version, " ... ", appendLF = FALSE)
+    dir.create(library, showWarnings = FALSE, recursive = TRUE)
+
+    # invoke using system2 so we can capture and report output
+    bin <- R.home("bin")
+    exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R"
+    r <- file.path(bin, exe)
+    args <- c("--vanilla", "CMD", "INSTALL", "-l", shQuote(library), shQuote(tarball))
+    output <- system2(r, args, stdout = TRUE, stderr = TRUE)
+    message("Done!")
+
+    # check for successful install
+    status <- attr(output, "status")
+    if (is.numeric(status) && !identical(status, 0L)) {
+      header <- "Error installing renv:"
+      lines <- paste(rep.int("=", nchar(header)), collapse = "")
+      text <- c(header, lines, output)
+      writeLines(text, con = stderr())
+    }
+
+    status
+
+  }
+
+  renv_bootstrap_prefix <- function() {
+
+    # construct version prefix
+    version <- paste(R.version$major, R.version$minor, sep = ".")
+    prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-")
+
+    # include SVN revision for development versions of R
+    # (to avoid sharing platform-specific artefacts with released versions of R)
+    devel <-
+      identical(R.version[["status"]],   "Under development (unstable)") ||
+      identical(R.version[["nickname"]], "Unsuffered Consequences")
+
+    if (devel)
+      prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r")
+
+    # build list of path components
+    components <- c(prefix, R.version$platform)
+
+    # include prefix if provided by user
+    prefix <- Sys.getenv("RENV_PATHS_PREFIX")
+    if (nzchar(prefix))
+      components <- c(prefix, components)
+
+    # build prefix
+    paste(components, collapse = "/")
+
+  }
+
+  renv_bootstrap_library_root_name <- function(project) {
+
+    # use project name as-is if requested
+    asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE")
+    if (asis)
+      return(basename(project))
+
+    # otherwise, disambiguate based on project's path
+    id <- substring(renv_bootstrap_hash_text(project), 1L, 8L)
+    paste(basename(project), id, sep = "-")
+
+  }
+
+  renv_bootstrap_library_root <- function(project) {
+
+    path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA)
+    if (!is.na(path))
+      return(path)
+
+    path <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA)
+    if (!is.na(path)) {
+      name <- renv_bootstrap_library_root_name(project)
+      return(file.path(path, name))
+    }
+
+    file.path(project, "renv/library")
+
+  }
+
+  renv_bootstrap_validate_version <- function(version) {
+
+    loadedversion <- utils::packageDescription("renv", fields = "Version")
+    if (version == loadedversion)
+      return(TRUE)
+
+    # assume four-component versions are from GitHub; three-component
+    # versions are from CRAN
+    components <- strsplit(loadedversion, "[.-]")[[1]]
+    remote <- if (length(components) == 4L)
+      paste("rstudio/renv", loadedversion, sep = "@")
+    else
+      paste("renv", loadedversion, sep = "@")
+
+    fmt <- paste(
+      "renv %1$s was loaded from project library, but this project is configured to use renv %2$s.",
+      "Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.",
+      "Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.",
+      sep = "\n"
+    )
+
+    msg <- sprintf(fmt, loadedversion, version, remote)
+    warning(msg, call. = FALSE)
+
+    FALSE
+
+  }
+
+  renv_bootstrap_hash_text <- function(text) {
+
+    hashfile <- tempfile("renv-hash-")
+    on.exit(unlink(hashfile), add = TRUE)
+
+    writeLines(text, con = hashfile)
+    tools::md5sum(hashfile)
+
+  }
+
+  renv_bootstrap_load <- function(project, libpath, version) {
+
+    # try to load renv from the project library
+    if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE))
+      return(FALSE)
+
+    # warn if the version of renv loaded does not match
+    renv_bootstrap_validate_version(version)
+
+    # load the project
+    renv::load(project)
+
+    TRUE
+
+  }
+
+  # construct path to library root
+  root <- renv_bootstrap_library_root(project)
+
+  # construct library prefix for platform
+  prefix <- renv_bootstrap_prefix()
+
+  # construct full libpath
+  libpath <- file.path(root, prefix)
+
+  # attempt to load
+  if (renv_bootstrap_load(project, libpath, version))
+    return(TRUE)
+
+  # load failed; inform user we're about to bootstrap
+  prefix <- paste("# Bootstrapping renv", version)
+  postfix <- paste(rep.int("-", 77L - nchar(prefix)), collapse = "")
+  header <- paste(prefix, postfix)
+  message(header)
+
+  # perform bootstrap
+  bootstrap(version, libpath)
+
+  # exit early if we're just testing bootstrap
+  if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA)))
+    return(TRUE)
+
+  # try again to load
+  if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) {
+    message("* Successfully installed and loaded renv ", version, ".")
+    return(renv::load())
+  }
+
+  # failed to download or load renv; warn the user
+  msg <- c(
+    "Failed to find an renv installation: the project will not be loaded.",
+    "Use `renv::activate()` to re-initialize the project."
+  )
+
+  warning(paste(msg, collapse = "\n"), call. = FALSE)
+
+})
diff --git a/pre_commit/resources/empty_template_go.mod b/pre_commit/resources/empty_template_go.mod
index de3e241..892c4e5 100644
--- a/pre_commit/resources/empty_template_go.mod
+++ b/pre_commit/resources/empty_template_go.mod
@@ -1 +1 @@
-module pre-commit-dummy-empty-module
+module pre-commit-placeholder-empty-module
diff --git a/pre_commit/resources/empty_template_package.json b/pre_commit/resources/empty_template_package.json
index ac7b725..042e958 100644
--- a/pre_commit/resources/empty_template_package.json
+++ b/pre_commit/resources/empty_template_package.json
@@ -1,4 +1,4 @@
 {
-    "name": "pre_commit_dummy_package",
+    "name": "pre_commit_placeholder_package",
     "version": "0.0.0"
 }
diff --git a/pre_commit/resources/empty_template_pre_commit_dummy_package.gemspec b/pre_commit/resources/empty_template_pre_commit_dummy_package.gemspec
deleted file mode 100644
index 8bfb40c..0000000
--- a/pre_commit/resources/empty_template_pre_commit_dummy_package.gemspec
+++ /dev/null
@@ -1,6 +0,0 @@
-Gem::Specification.new do |s|
-    s.name = 'pre_commit_dummy_package'
-    s.version = '0.0.0'
-    s.summary = 'dummy gem for pre-commit hooks'
-    s.authors = ['Anthony Sottile']
-end
diff --git a/pre_commit/resources/empty_template_pre_commit_placeholder_package.gemspec b/pre_commit/resources/empty_template_pre_commit_placeholder_package.gemspec
new file mode 100644
index 0000000..630f0d4
--- /dev/null
+++ b/pre_commit/resources/empty_template_pre_commit_placeholder_package.gemspec
@@ -0,0 +1,6 @@
+Gem::Specification.new do |s|
+    s.name = 'pre_commit_placeholder_package'
+    s.version = '0.0.0'
+    s.summary = 'placeholder gem for pre-commit hooks'
+    s.authors = ['Anthony Sottile']
+end
diff --git a/pre_commit/resources/empty_template_setup.py b/pre_commit/resources/empty_template_setup.py
index 6886064..ef05eef 100644
--- a/pre_commit/resources/empty_template_setup.py
+++ b/pre_commit/resources/empty_template_setup.py
@@ -1,4 +1,4 @@
 from setuptools import setup
 
 
-setup(name='pre-commit-dummy-package', version='0.0.0')
+setup(name='pre-commit-placeholder-package', version='0.0.0')
diff --git a/pre_commit/resources/rbenv.tar.gz b/pre_commit/resources/rbenv.tar.gz
index 95b5a36..98b7e0f 100644
--- a/pre_commit/resources/rbenv.tar.gz
+++ b/pre_commit/resources/rbenv.tar.gz
diff --git a/pre_commit/resources/ruby-build.tar.gz b/pre_commit/resources/ruby-build.tar.gz
index ef82e2f..afec5db 100644
--- a/pre_commit/resources/ruby-build.tar.gz
+++ b/pre_commit/resources/ruby-build.tar.gz
diff --git a/pre_commit/resources/ruby-download.tar.gz b/pre_commit/resources/ruby-download.tar.gz
index 2e19507..92502a7 100644
--- a/pre_commit/resources/ruby-download.tar.gz
+++ b/pre_commit/resources/ruby-download.tar.gz
diff --git a/pre_commit/store.py b/pre_commit/store.py
index 187c9d3..0fd5e62 100644
--- a/pre_commit/store.py
+++ b/pre_commit/store.py
@@ -188,15 +188,20 @@ class Store:
 
     LOCAL_RESOURCES = (
         'Cargo.toml', 'main.go', 'go.mod', 'main.rs', '.npmignore',
-        'package.json', 'pre_commit_dummy_package.gemspec', 'setup.py',
-        'environment.yml', 'Makefile.PL', 'renv.lock',
+        'package.json', 'pre_commit_placeholder_package.gemspec', 'setup.py',
+        'environment.yml', 'Makefile.PL',
+        'renv.lock', 'renv/activate.R', 'renv/LICENSE.renv',
     )
 
     def make_local(self, deps: Sequence[str]) -> str:
         def make_local_strategy(directory: str) -> None:
             for resource in self.LOCAL_RESOURCES:
-                contents = resource_text(f'empty_template_{resource}')
-                with open(os.path.join(directory, resource), 'w') as f:
+                resource_dirname, resource_basename = os.path.split(resource)
+                contents = resource_text(f'empty_template_{resource_basename}')
+                target_dir = os.path.join(directory, resource_dirname)
+                target_file = os.path.join(target_dir, resource_basename)
+                os.makedirs(target_dir, exist_ok=True)
+                with open(target_file, 'w') as f:
                     f.write(contents)
 
             env = git.no_git_env()
diff --git a/setup.cfg b/setup.cfg
index 4002998..ae5cc7c 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = pre_commit
-version = 2.12.1
+version = 2.13.0
 description = A framework for managing and maintaining multi-language pre-commit hooks.
 long_description = file: README.md
 long_description_content_type = text/markdown
diff --git a/testing/make-archives b/testing/make-archives
index b2b288c..cb0b0a4 100755
--- a/testing/make-archives
+++ b/testing/make-archives
@@ -1,5 +1,6 @@
 #!/usr/bin/env python3
 import argparse
+import gzip
 import os.path
 import shutil
 import subprocess
@@ -14,25 +15,24 @@ from typing import Sequence
 
 
 REPOS = (
-    ('rbenv', 'git://github.com/rbenv/rbenv', '0843745'),
-    ('ruby-build', 'git://github.com/rbenv/ruby-build', '500863c'),
+    ('rbenv', 'https://github.com/rbenv/rbenv', '585ed84'),
+    ('ruby-build', 'https://github.com/rbenv/ruby-build', 'e9fa4bf'),
     (
         'ruby-download',
-        'git://github.com/garnieretienne/rvm-download',
+        'https://github.com/garnieretienne/rvm-download',
         '09bd7c6',
     ),
 )
 
 
+def reset(tarinfo: tarfile.TarInfo) -> tarfile.TarInfo:
+    tarinfo.uid = tarinfo.gid = 0
+    tarinfo.uname = tarinfo.gname = 'root'
+    tarinfo.mtime = 0
+    return tarinfo
+
+
 def make_archive(name: str, repo: str, ref: str, destdir: str) -> str:
-    """Makes an archive of a repository in the given destdir.
-
-    :param text name: Name to give the archive.  For instance foo.  The file
-    that is created will be called foo.tar.gz.
-    :param text repo: Repository to clone.
-    :param text ref: Tag/SHA/branch to check out.
-    :param text destdir: Directory to place archives in.
-    """
     output_path = os.path.join(destdir, f'{name}.tar.gz')
     with tempfile.TemporaryDirectory() as tmpdir:
         # this ensures that the root directory has umask permissions
@@ -47,8 +47,24 @@ def make_archive(name: str, repo: str, ref: str, destdir: str) -> str:
         # runtime
         shutil.rmtree(os.path.join(gitdir, '.git'))
 
-        with tarfile.open(output_path, 'w|gz') as tf:
-            tf.add(gitdir, name)
+        arcs = [(name, gitdir)]
+        for root, dirs, filenames in os.walk(gitdir):
+            for filename in dirs + filenames:
+                abspath = os.path.abspath(os.path.join(root, filename))
+                relpath = os.path.relpath(abspath, gitdir)
+                arcs.append((os.path.join(name, relpath), abspath))
+        arcs.sort()
+
+        with gzip.GzipFile(output_path, 'wb', mtime=0) as gzipf:
+            # https://github.com/python/typeshed/issues/5491
+            with tarfile.open(fileobj=gzipf, mode='w') as tf:  # type: ignore
+                for arcname, abspath in arcs:
+                    tf.add(
+                        abspath,
+                        arcname=arcname,
+                        recursive=False,
+                        filter=reset,
+                    )
 
     return output_path
 
diff --git a/testing/resources/r_hooks_repo/renv/LICENSE b/testing/resources/r_hooks_repo/renv/LICENSE
new file mode 100644
index 0000000..253c5d1
--- /dev/null
+++ b/testing/resources/r_hooks_repo/renv/LICENSE
@@ -0,0 +1,7 @@
+Copyright 2021 RStudio, PBC
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
diff --git a/testing/resources/r_hooks_repo/renv/activate.R b/testing/resources/r_hooks_repo/renv/activate.R
new file mode 100644
index 0000000..d8d092c
--- /dev/null
+++ b/testing/resources/r_hooks_repo/renv/activate.R
@@ -0,0 +1,440 @@
+
+local({
+
+  # the requested version of renv
+  version <- "0.12.5"
+
+  # the project directory
+  project <- getwd()
+
+  # avoid recursion
+  if (!is.na(Sys.getenv("RENV_R_INITIALIZING", unset = NA)))
+    return(invisible(TRUE))
+
+  # signal that we're loading renv during R startup
+  Sys.setenv("RENV_R_INITIALIZING" = "true")
+  on.exit(Sys.unsetenv("RENV_R_INITIALIZING"), add = TRUE)
+
+  # signal that we've consented to use renv
+  options(renv.consent = TRUE)
+
+  # load the 'utils' package eagerly -- this ensures that renv shims, which
+  # mask 'utils' packages, will come first on the search path
+  library(utils, lib.loc = .Library)
+
+  # check to see if renv has already been loaded
+  if ("renv" %in% loadedNamespaces()) {
+
+    # if renv has already been loaded, and it's the requested version of renv,
+    # nothing to do
+    spec <- .getNamespaceInfo(.getNamespace("renv"), "spec")
+    if (identical(spec[["version"]], version))
+      return(invisible(TRUE))
+
+    # otherwise, unload and attempt to load the correct version of renv
+    unloadNamespace("renv")
+
+  }
+
+  # load bootstrap tools
+  bootstrap <- function(version, library) {
+
+    # attempt to download renv
+    tarball <- tryCatch(renv_bootstrap_download(version), error = identity)
+    if (inherits(tarball, "error"))
+      stop("failed to download renv ", version)
+
+    # now attempt to install
+    status <- tryCatch(renv_bootstrap_install(version, tarball, library), error = identity)
+    if (inherits(status, "error"))
+      stop("failed to install renv ", version)
+
+  }
+
+  renv_bootstrap_tests_running <- function() {
+    getOption("renv.tests.running", default = FALSE)
+  }
+
+  renv_bootstrap_repos <- function() {
+
+    # check for repos override
+    repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA)
+    if (!is.na(repos))
+      return(repos)
+
+    # if we're testing, re-use the test repositories
+    if (renv_bootstrap_tests_running())
+      return(getOption("renv.tests.repos"))
+
+    # retrieve current repos
+    repos <- getOption("repos")
+
+    # ensure @CRAN@ entries are resolved
+    repos[repos == "@CRAN@"] <- "https://cloud.r-project.org"
+
+    # add in renv.bootstrap.repos if set
+    default <- c(CRAN = "https://cloud.r-project.org")
+    extra <- getOption("renv.bootstrap.repos", default = default)
+    repos <- c(repos, extra)
+
+    # remove duplicates that might've snuck in
+    dupes <- duplicated(repos) | duplicated(names(repos))
+    repos[!dupes]
+
+  }
+
+  renv_bootstrap_download <- function(version) {
+
+    # if the renv version number has 4 components, assume it must
+    # be retrieved via github
+    nv <- numeric_version(version)
+    components <- unclass(nv)[[1]]
+
+    methods <- if (length(components) == 4L) {
+      list(
+        renv_bootstrap_download_github
+      )
+    } else {
+      list(
+        renv_bootstrap_download_cran_latest,
+        renv_bootstrap_download_cran_archive
+      )
+    }
+
+    for (method in methods) {
+      path <- tryCatch(method(version), error = identity)
+      if (is.character(path) && file.exists(path))
+        return(path)
+    }
+
+    stop("failed to download renv ", version)
+
+  }
+
+  renv_bootstrap_download_impl <- function(url, destfile) {
+
+    mode <- "wb"
+
+    # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715
+    fixup <-
+      Sys.info()[["sysname"]] == "Windows" &&
+      substring(url, 1L, 5L) == "file:"
+
+    if (fixup)
+      mode <- "w+b"
+
+    utils::download.file(
+      url      = url,
+      destfile = destfile,
+      mode     = mode,
+      quiet    = TRUE
+    )
+
+  }
+
+  renv_bootstrap_download_cran_latest <- function(version) {
+
+    repos <- renv_bootstrap_download_cran_latest_find(version)
+
+    message("* Downloading renv ", version, " from CRAN ... ", appendLF = FALSE)
+
+    info <- tryCatch(
+      utils::download.packages(
+        pkgs = "renv",
+        repos = repos,
+        destdir = tempdir(),
+        quiet = TRUE
+      ),
+      condition = identity
+    )
+
+    if (inherits(info, "condition")) {
+      message("FAILED")
+      return(FALSE)
+    }
+
+    message("OK")
+    info[1, 2]
+
+  }
+
+  renv_bootstrap_download_cran_latest_find <- function(version) {
+
+    all <- renv_bootstrap_repos()
+
+    for (repos in all) {
+
+      db <- tryCatch(
+        as.data.frame(
+          x = utils::available.packages(repos = repos),
+          stringsAsFactors = FALSE
+        ),
+        error = identity
+      )
+
+      if (inherits(db, "error"))
+        next
+
+      entry <- db[db$Package %in% "renv" & db$Version %in% version, ]
+      if (nrow(entry) == 0)
+        next
+
+      return(repos)
+
+    }
+
+    fmt <- "renv %s is not available from your declared package repositories"
+    stop(sprintf(fmt, version))
+
+  }
+
+  renv_bootstrap_download_cran_archive <- function(version) {
+
+    name <- sprintf("renv_%s.tar.gz", version)
+    repos <- renv_bootstrap_repos()
+    urls <- file.path(repos, "src/contrib/Archive/renv", name)
+    destfile <- file.path(tempdir(), name)
+
+    message("* Downloading renv ", version, " from CRAN archive ... ", appendLF = FALSE)
+
+    for (url in urls) {
+
+      status <- tryCatch(
+        renv_bootstrap_download_impl(url, destfile),
+        condition = identity
+      )
+
+      if (identical(status, 0L)) {
+        message("OK")
+        return(destfile)
+      }
+
+    }
+
+    message("FAILED")
+    return(FALSE)
+
+  }
+
+  renv_bootstrap_download_github <- function(version) {
+
+    enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE")
+    if (!identical(enabled, "TRUE"))
+      return(FALSE)
+
+    # prepare download options
+    pat <- Sys.getenv("GITHUB_PAT")
+    if (nzchar(Sys.which("curl")) && nzchar(pat)) {
+      fmt <- "--location --fail --header \"Authorization: token %s\""
+      extra <- sprintf(fmt, pat)
+      saved <- options("download.file.method", "download.file.extra")
+      options(download.file.method = "curl", download.file.extra = extra)
+      on.exit(do.call(base::options, saved), add = TRUE)
+    } else if (nzchar(Sys.which("wget")) && nzchar(pat)) {
+      fmt <- "--header=\"Authorization: token %s\""
+      extra <- sprintf(fmt, pat)
+      saved <- options("download.file.method", "download.file.extra")
+      options(download.file.method = "wget", download.file.extra = extra)
+      on.exit(do.call(base::options, saved), add = TRUE)
+    }
+
+    message("* Downloading renv ", version, " from GitHub ... ", appendLF = FALSE)
+
+    url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version)
+    name <- sprintf("renv_%s.tar.gz", version)
+    destfile <- file.path(tempdir(), name)
+
+    status <- tryCatch(
+      renv_bootstrap_download_impl(url, destfile),
+      condition = identity
+    )
+
+    if (!identical(status, 0L)) {
+      message("FAILED")
+      return(FALSE)
+    }
+
+    message("OK")
+    return(destfile)
+
+  }
+
+  renv_bootstrap_install <- function(version, tarball, library) {
+
+    # attempt to install it into project library
+    message("* Installing renv ", version, " ... ", appendLF = FALSE)
+    dir.create(library, showWarnings = FALSE, recursive = TRUE)
+
+    # invoke using system2 so we can capture and report output
+    bin <- R.home("bin")
+    exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R"
+    r <- file.path(bin, exe)
+    args <- c("--vanilla", "CMD", "INSTALL", "-l", shQuote(library), shQuote(tarball))
+    output <- system2(r, args, stdout = TRUE, stderr = TRUE)
+    message("Done!")
+
+    # check for successful install
+    status <- attr(output, "status")
+    if (is.numeric(status) && !identical(status, 0L)) {
+      header <- "Error installing renv:"
+      lines <- paste(rep.int("=", nchar(header)), collapse = "")
+      text <- c(header, lines, output)
+      writeLines(text, con = stderr())
+    }
+
+    status
+
+  }
+
+  renv_bootstrap_prefix <- function() {
+
+    # construct version prefix
+    version <- paste(R.version$major, R.version$minor, sep = ".")
+    prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-")
+
+    # include SVN revision for development versions of R
+    # (to avoid sharing platform-specific artefacts with released versions of R)
+    devel <-
+      identical(R.version[["status"]],   "Under development (unstable)") ||
+      identical(R.version[["nickname"]], "Unsuffered Consequences")
+
+    if (devel)
+      prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r")
+
+    # build list of path components
+    components <- c(prefix, R.version$platform)
+
+    # include prefix if provided by user
+    prefix <- Sys.getenv("RENV_PATHS_PREFIX")
+    if (nzchar(prefix))
+      components <- c(prefix, components)
+
+    # build prefix
+    paste(components, collapse = "/")
+
+  }
+
+  renv_bootstrap_library_root_name <- function(project) {
+
+    # use project name as-is if requested
+    asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE")
+    if (asis)
+      return(basename(project))
+
+    # otherwise, disambiguate based on project's path
+    id <- substring(renv_bootstrap_hash_text(project), 1L, 8L)
+    paste(basename(project), id, sep = "-")
+
+  }
+
+  renv_bootstrap_library_root <- function(project) {
+
+    path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA)
+    if (!is.na(path))
+      return(path)
+
+    path <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA)
+    if (!is.na(path)) {
+      name <- renv_bootstrap_library_root_name(project)
+      return(file.path(path, name))
+    }
+
+    file.path(project, "renv/library")
+
+  }
+
+  renv_bootstrap_validate_version <- function(version) {
+
+    loadedversion <- utils::packageDescription("renv", fields = "Version")
+    if (version == loadedversion)
+      return(TRUE)
+
+    # assume four-component versions are from GitHub; three-component
+    # versions are from CRAN
+    components <- strsplit(loadedversion, "[.-]")[[1]]
+    remote <- if (length(components) == 4L)
+      paste("rstudio/renv", loadedversion, sep = "@")
+    else
+      paste("renv", loadedversion, sep = "@")
+
+    fmt <- paste(
+      "renv %1$s was loaded from project library, but this project is configured to use renv %2$s.",
+      "Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.",
+      "Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.",
+      sep = "\n"
+    )
+
+    msg <- sprintf(fmt, loadedversion, version, remote)
+    warning(msg, call. = FALSE)
+
+    FALSE
+
+  }
+
+  renv_bootstrap_hash_text <- function(text) {
+
+    hashfile <- tempfile("renv-hash-")
+    on.exit(unlink(hashfile), add = TRUE)
+
+    writeLines(text, con = hashfile)
+    tools::md5sum(hashfile)
+
+  }
+
+  renv_bootstrap_load <- function(project, libpath, version) {
+
+    # try to load renv from the project library
+    if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE))
+      return(FALSE)
+
+    # warn if the version of renv loaded does not match
+    renv_bootstrap_validate_version(version)
+
+    # load the project
+    renv::load(project)
+
+    TRUE
+
+  }
+
+  # construct path to library root
+  root <- renv_bootstrap_library_root(project)
+
+  # construct library prefix for platform
+  prefix <- renv_bootstrap_prefix()
+
+  # construct full libpath
+  libpath <- file.path(root, prefix)
+
+  # attempt to load
+  if (renv_bootstrap_load(project, libpath, version))
+    return(TRUE)
+
+  # load failed; inform user we're about to bootstrap
+  prefix <- paste("# Bootstrapping renv", version)
+  postfix <- paste(rep.int("-", 77L - nchar(prefix)), collapse = "")
+  header <- paste(prefix, postfix)
+  message(header)
+
+  # perform bootstrap
+  bootstrap(version, libpath)
+
+  # exit early if we're just testing bootstrap
+  if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA)))
+    return(TRUE)
+
+  # try again to load
+  if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) {
+    message("* Successfully installed and loaded renv ", version, ".")
+    return(renv::load())
+  }
+
+  # failed to download or load renv; warn the user
+  msg <- c(
+    "Failed to find an renv installation: the project will not be loaded.",
+    "Use `renv::activate()` to re-initialize the project."
+  )
+
+  warning(paste(msg, collapse = "\n"), call. = FALSE)
+
+})
diff --git a/tests/commands/run_test.py b/tests/commands/run_test.py
index 4cd70fd..e184340 100644
--- a/tests/commands/run_test.py
+++ b/tests/commands/run_test.py
@@ -526,9 +526,9 @@ def test_merge_conflict(cap_out, store, in_merge_conflict):
 
 def test_merge_conflict_modified(cap_out, store, in_merge_conflict):
     # Touch another file so we have unstaged non-conflicting things
-    assert os.path.exists('dummy')
-    with open('dummy', 'w') as dummy_file:
-        dummy_file.write('bar\nbaz\n')
+    assert os.path.exists('placeholder')
+    with open('placeholder', 'w') as placeholder_file:
+        placeholder_file.write('bar\nbaz\n')
 
     ret, printed = _do_run(cap_out, store, in_merge_conflict, run_opts())
     assert ret == 1
@@ -600,6 +600,29 @@ def test_skip_aliased_hook(cap_out, store, aliased_repo):
         assert printed.count(msg) == 1
 
 
+def test_skip_bypasses_installation(cap_out, store, repo_with_passing_hook):
+    config = {
+        'repo': 'local',
+        'hooks': [
+            {
+                'id': 'skipme',
+                'name': 'skipme',
+                'entry': 'skipme',
+                'language': 'python',
+                'additional_dependencies': ['/pre-commit-does-not-exist'],
+            },
+        ],
+    }
+    add_config_to_repo(repo_with_passing_hook, config)
+
+    ret, printed = _do_run(
+        cap_out, store, repo_with_passing_hook,
+        run_opts(all_files=True),
+        {'SKIP': 'skipme'},
+    )
+    assert ret == 0
+
+
 def test_hook_id_not_in_non_verbose_output(
         cap_out, store, repo_with_passing_hook,
 ):
@@ -808,9 +831,9 @@ def test_local_hook_passes(cap_out, store, repo_with_passing_hook):
     }
     add_config_to_repo(repo_with_passing_hook, config)
 
-    with open('dummy.py', 'w') as staged_file:
+    with open('placeholder.py', 'w') as staged_file:
         staged_file.write('"""TODO: something"""\n')
-    cmd_output('git', 'add', 'dummy.py')
+    cmd_output('git', 'add', 'placeholder.py')
 
     _test_run(
         cap_out,
@@ -835,9 +858,9 @@ def test_local_hook_fails(cap_out, store, repo_with_passing_hook):
     }
     add_config_to_repo(repo_with_passing_hook, config)
 
-    with open('dummy.py', 'w') as staged_file:
+    with open('placeholder.py', 'w') as staged_file:
         staged_file.write('"""TODO: something"""\n')
-    cmd_output('git', 'add', 'dummy.py')
+    cmd_output('git', 'add', 'placeholder.py')
 
     _test_run(
         cap_out,
diff --git a/tests/conftest.py b/tests/conftest.py
index b36ce5a..f38f969 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -90,8 +90,8 @@ def _make_conflict():
 @pytest.fixture
 def in_merge_conflict(tempdir_factory):
     path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
-    open(os.path.join(path, 'dummy'), 'a').close()
-    cmd_output('git', 'add', 'dummy', cwd=path)
+    open(os.path.join(path, 'placeholder'), 'a').close()
+    cmd_output('git', 'add', 'placeholder', cwd=path)
     git_commit(msg=in_merge_conflict.__name__, cwd=path)
 
     conflict_path = tempdir_factory.get()
diff --git a/tests/languages/docker_test.py b/tests/languages/docker_test.py
index 3bed4bf..01b5e27 100644
--- a/tests/languages/docker_test.py
+++ b/tests/languages/docker_test.py
@@ -1,14 +1,155 @@
+import builtins
+import json
+import ntpath
+import os.path
+import posixpath
 from unittest import mock
 
+import pytest
+
 from pre_commit.languages import docker
 
 
 def test_docker_fallback_user():
     def invalid_attribute():
         raise AttributeError
+
     with mock.patch.multiple(
-        'os', create=True,
-        getuid=invalid_attribute,
-        getgid=invalid_attribute,
+            'os', create=True,
+            getuid=invalid_attribute,
+            getgid=invalid_attribute,
     ):
         assert docker.get_docker_user() == ()
+
+
+def test_in_docker_no_file():
+    with mock.patch.object(builtins, 'open', side_effect=FileNotFoundError):
+        assert docker._is_in_docker() is False
+
+
+def _mock_open(data):
+    return mock.patch.object(
+        builtins,
+        'open',
+        new_callable=mock.mock_open,
+        read_data=data,
+    )
+
+
+def test_in_docker_docker_in_file():
+    docker_cgroup_example = b'''\
+12:hugetlb:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+11:blkio:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+10:freezer:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+9:cpu,cpuacct:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+8:pids:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+7:rdma:/
+6:net_cls,net_prio:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+5:cpuset:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+4:devices:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+3:memory:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+2:perf_event:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+1:name=systemd:/docker/c33988ec7651ebc867cb24755eaf637a6734088bc7eef59d5799293a9e5450f7
+0::/system.slice/containerd.service
+'''  # noqa: E501
+    with _mock_open(docker_cgroup_example):
+        assert docker._is_in_docker() is True
+
+
+def test_in_docker_docker_not_in_file():
+    non_docker_cgroup_example = b'''\
+12:perf_event:/
+11:hugetlb:/
+10:devices:/
+9:blkio:/
+8:rdma:/
+7:cpuset:/
+6:cpu,cpuacct:/
+5:freezer:/
+4:memory:/
+3:pids:/
+2:net_cls,net_prio:/
+1:name=systemd:/init.scope
+0::/init.scope
+'''
+    with _mock_open(non_docker_cgroup_example):
+        assert docker._is_in_docker() is False
+
+
+def test_get_docker_path_not_in_docker_returns_same():
+    with mock.patch.object(docker, '_is_in_docker', return_value=False):
+        assert docker._get_docker_path('abc') == 'abc'
+
+
+@pytest.fixture
+def in_docker():
+    with mock.patch.object(docker, '_is_in_docker', return_value=True):
+        yield
+
+
+def _linux_commonpath():
+    return mock.patch.object(os.path, 'commonpath', posixpath.commonpath)
+
+
+def _nt_commonpath():
+    return mock.patch.object(os.path, 'commonpath', ntpath.commonpath)
+
+
+def _docker_output(out):
+    ret = (0, out, b'')
+    return mock.patch.object(docker, 'cmd_output_b', return_value=ret)
+
+
+def test_get_docker_path_in_docker_no_binds_same_path(in_docker):
+    docker_out = json.dumps([{'Mounts': []}]).encode()
+
+    with _docker_output(docker_out):
+        assert docker._get_docker_path('abc') == 'abc'
+
+
+def test_get_docker_path_in_docker_binds_path_equal(in_docker):
+    binds_list = [{'Source': '/opt/my_code', 'Destination': '/project'}]
+    docker_out = json.dumps([{'Mounts': binds_list}]).encode()
+
+    with _linux_commonpath(), _docker_output(docker_out):
+        assert docker._get_docker_path('/project') == '/opt/my_code'
+
+
+def test_get_docker_path_in_docker_binds_path_complex(in_docker):
+    binds_list = [{'Source': '/opt/my_code', 'Destination': '/project'}]
+    docker_out = json.dumps([{'Mounts': binds_list}]).encode()
+
+    with _linux_commonpath(), _docker_output(docker_out):
+        path = '/project/test/something'
+        assert docker._get_docker_path(path) == '/opt/my_code/test/something'
+
+
+def test_get_docker_path_in_docker_no_substring(in_docker):
+    binds_list = [{'Source': '/opt/my_code', 'Destination': '/project'}]
+    docker_out = json.dumps([{'Mounts': binds_list}]).encode()
+
+    with _linux_commonpath(), _docker_output(docker_out):
+        path = '/projectSuffix/test/something'
+        assert docker._get_docker_path(path) == path
+
+
+def test_get_docker_path_in_docker_binds_path_many_binds(in_docker):
+    binds_list = [
+        {'Source': '/something_random', 'Destination': '/not-related'},
+        {'Source': '/opt/my_code', 'Destination': '/project'},
+        {'Source': '/something-random-2', 'Destination': '/not-related-2'},
+    ]
+    docker_out = json.dumps([{'Mounts': binds_list}]).encode()
+
+    with _linux_commonpath(), _docker_output(docker_out):
+        assert docker._get_docker_path('/project') == '/opt/my_code'
+
+
+def test_get_docker_path_in_docker_windows(in_docker):
+    binds_list = [{'Source': r'c:\users\user', 'Destination': r'c:\folder'}]
+    docker_out = json.dumps([{'Mounts': binds_list}]).encode()
+
+    with _nt_commonpath(), _docker_output(docker_out):
+        path = r'c:\folder\test\something'
+        expected = r'c:\users\user\test\something'
+        assert docker._get_docker_path(path) == expected
diff --git a/tests/languages/r_test.py b/tests/languages/r_test.py
index 5c046ef..66aa7b3 100644
--- a/tests/languages/r_test.py
+++ b/tests/languages/r_test.py
@@ -14,10 +14,12 @@ def _test_r_parsing(
     hook_id,
     expected_hook_expr={},
     expected_args={},
+    config={},
+    expect_path_prefix=True,
 ):
     repo_path = 'r_hooks_repo'
     path = make_repo(tempdir_factory, repo_path)
-    config = make_config_from_repo(path)
+    config = config or make_config_from_repo(path)
     hook = _get_hook_no_install(config, store, hook_id)
     ret = r._cmd_from_hook(hook)
     expected_cmd = 'Rscript'
@@ -25,7 +27,8 @@ def _test_r_parsing(
         '--no-save', '--no-restore', '--no-site-file', '--no-environ',
     )
     expected_path = os.path.join(
-        hook.prefix.prefix_dir, '.'.join([hook_id, 'R']),
+        hook.prefix.prefix_dir if expect_path_prefix else '',
+        f'{hook_id}.R',
     )
     expected = (
         expected_cmd,
@@ -102,3 +105,25 @@ def test_r_parsing_expr_non_Rscirpt(tempdir_factory, store):
 
     msg = execinfo.value.args
     assert msg == ('entry must start with `Rscript`.',)
+
+
+def test_r_parsing_file_local(tempdir_factory, store):
+    path = 'path/to/script.R'
+    hook_id = 'local-r'
+    config = {
+        'repo': 'local',
+        'hooks': [{
+            'id': hook_id,
+            'name': 'local-r',
+            'entry': f'Rscript {path}',
+            'language': 'r',
+        }],
+    }
+    _test_r_parsing(
+        tempdir_factory,
+        store,
+        hook_id=hook_id,
+        expected_hook_expr=(path,),
+        config=config,
+        expect_path_prefix=False,
+    )
diff --git a/tests/languages/ruby_test.py b/tests/languages/ruby_test.py
index 0c6cfed..7dff046 100644
--- a/tests/languages/ruby_test.py
+++ b/tests/languages/ruby_test.py
@@ -36,13 +36,13 @@ def test_uses_system_if_both_gem_and_ruby_are_available(find_exe_mck):
 def fake_gem_prefix(tmpdir):
     gemspec = '''\
 Gem::Specification.new do |s|
-    s.name = 'pre_commit_dummy_package'
+    s.name = 'pre_commit_placeholder_package'
     s.version = '0.0.0'
-    s.summary = 'dummy gem for pre-commit hooks'
+    s.summary = 'placeholder gem for pre-commit hooks'
     s.authors = ['Anthony Sottile']
 end
 '''
-    tmpdir.join('dummy_gem.gemspec').write(gemspec)
+    tmpdir.join('placeholder_gem.gemspec').write(gemspec)
     yield Prefix(tmpdir)
 
 
@@ -53,7 +53,7 @@ def test_install_ruby_system(fake_gem_prefix):
     # Should be able to activate and use rbenv install
     with ruby.in_env(fake_gem_prefix, 'system'):
         _, out, _ = cmd_output('gem', 'list')
-        assert 'pre_commit_dummy_package' in out
+        assert 'pre_commit_placeholder_package' in out
 
 
 @xfailif_windows  # pragma: win32 no cover
diff --git a/tests/store_test.py b/tests/store_test.py
index 0947144..5a5d69e 100644
--- a/tests/store_test.py
+++ b/tests/store_test.py
@@ -186,7 +186,7 @@ def test_local_resources_reflects_reality():
         for res in os.listdir('pre_commit/resources')
         if res.startswith('empty_template_')
     }
-    assert on_disk == set(Store.LOCAL_RESOURCES)
+    assert on_disk == {os.path.basename(x) for x in Store.LOCAL_RESOURCES}
 
 
 def test_mark_config_as_used(store, tmpdir):