Adding upstream version 2.2.0.upstream/2.2.0

Signed-off-by: Daniel Baumann <daniel.baumann@progress-linux.org>

11 files changed, 3197 insertions, 0 deletions

diff --git a/tests/commands/__init__.py b/tests/commands/__init__.py
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/tests/commands/__init__.py
diff --git a/tests/commands/autoupdate_test.py b/tests/commands/autoupdate_test.py
new file mode 100644
index 0000000..2c7b2f1
--- /dev/null
+++ b/tests/commands/autoupdate_test.py
@@ -0,0 +1,437 @@
+import shlex
+
+import pytest
+
+import pre_commit.constants as C
+from pre_commit import git
+from pre_commit.commands.autoupdate import _check_hooks_still_exist_at_rev
+from pre_commit.commands.autoupdate import autoupdate
+from pre_commit.commands.autoupdate import RepositoryCannotBeUpdatedError
+from pre_commit.commands.autoupdate import RevInfo
+from pre_commit.util import cmd_output
+from testing.auto_namedtuple import auto_namedtuple
+from testing.fixtures import add_config_to_repo
+from testing.fixtures import make_config_from_repo
+from testing.fixtures import make_repo
+from testing.fixtures import modify_manifest
+from testing.fixtures import read_config
+from testing.fixtures import sample_local_config
+from testing.fixtures import write_config
+from testing.util import git_commit
+
+
+@pytest.fixture
+def up_to_date(tempdir_factory):
+    yield make_repo(tempdir_factory, 'python_hooks_repo')
+
+
+@pytest.fixture
+def out_of_date(tempdir_factory):
+    path = make_repo(tempdir_factory, 'python_hooks_repo')
+    original_rev = git.head_rev(path)
+
+    git_commit(cwd=path)
+    head_rev = git.head_rev(path)
+
+    yield auto_namedtuple(
+        path=path, original_rev=original_rev, head_rev=head_rev,
+    )
+
+
+@pytest.fixture
+def tagged(out_of_date):
+    cmd_output('git', 'tag', 'v1.2.3', cwd=out_of_date.path)
+    yield out_of_date
+
+
+@pytest.fixture
+def hook_disappearing(tempdir_factory):
+    path = make_repo(tempdir_factory, 'python_hooks_repo')
+    original_rev = git.head_rev(path)
+
+    with modify_manifest(path) as manifest:
+        manifest[0]['id'] = 'bar'
+
+    yield auto_namedtuple(path=path, original_rev=original_rev)
+
+
+def test_rev_info_from_config():
+    info = RevInfo.from_config({'repo': 'repo/path', 'rev': 'v1.2.3'})
+    assert info == RevInfo('repo/path', 'v1.2.3', None)
+
+
+def test_rev_info_update_up_to_date_repo(up_to_date):
+    config = make_config_from_repo(up_to_date)
+    info = RevInfo.from_config(config)
+    new_info = info.update(tags_only=False, freeze=False)
+    assert info == new_info
+
+
+def test_rev_info_update_out_of_date_repo(out_of_date):
+    config = make_config_from_repo(
+        out_of_date.path, rev=out_of_date.original_rev,
+    )
+    info = RevInfo.from_config(config)
+    new_info = info.update(tags_only=False, freeze=False)
+    assert new_info.rev == out_of_date.head_rev
+
+
+def test_rev_info_update_non_master_default_branch(out_of_date):
+    # change the default branch to be not-master
+    cmd_output('git', '-C', out_of_date.path, 'branch', '-m', 'dev')
+    test_rev_info_update_out_of_date_repo(out_of_date)
+
+
+def test_rev_info_update_tags_even_if_not_tags_only(tagged):
+    config = make_config_from_repo(tagged.path, rev=tagged.original_rev)
+    info = RevInfo.from_config(config)
+    new_info = info.update(tags_only=False, freeze=False)
+    assert new_info.rev == 'v1.2.3'
+
+
+def test_rev_info_update_tags_only_does_not_pick_tip(tagged):
+    git_commit(cwd=tagged.path)
+    config = make_config_from_repo(tagged.path, rev=tagged.original_rev)
+    info = RevInfo.from_config(config)
+    new_info = info.update(tags_only=True, freeze=False)
+    assert new_info.rev == 'v1.2.3'
+
+
+def test_rev_info_update_freeze_tag(tagged):
+    git_commit(cwd=tagged.path)
+    config = make_config_from_repo(tagged.path, rev=tagged.original_rev)
+    info = RevInfo.from_config(config)
+    new_info = info.update(tags_only=True, freeze=True)
+    assert new_info.rev == tagged.head_rev
+    assert new_info.frozen == 'v1.2.3'
+
+
+def test_rev_info_update_does_not_freeze_if_already_sha(out_of_date):
+    config = make_config_from_repo(
+        out_of_date.path, rev=out_of_date.original_rev,
+    )
+    info = RevInfo.from_config(config)
+    new_info = info.update(tags_only=True, freeze=True)
+    assert new_info.rev == out_of_date.head_rev
+    assert new_info.frozen is None
+
+
+def test_autoupdate_up_to_date_repo(up_to_date, tmpdir, store):
+    contents = (
+        f'repos:\n'
+        f'-   repo: {up_to_date}\n'
+        f'    rev: {git.head_rev(up_to_date)}\n'
+        f'    hooks:\n'
+        f'    -   id: foo\n'
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(contents)
+
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=False) == 0
+    assert cfg.read() == contents
+
+
+def test_autoupdate_old_revision_broken(tempdir_factory, in_tmpdir, store):
+    """In $FUTURE_VERSION, hooks.yaml will no longer be supported.  This
+    asserts that when that day comes, pre-commit will be able to autoupdate
+    despite not being able to read hooks.yaml in that repository.
+    """
+    path = make_repo(tempdir_factory, 'python_hooks_repo')
+    config = make_config_from_repo(path, check=False)
+
+    cmd_output('git', 'mv', C.MANIFEST_FILE, 'nope.yaml', cwd=path)
+    git_commit(cwd=path)
+    # Assume this is the revision the user's old repository was at
+    rev = git.head_rev(path)
+    cmd_output('git', 'mv', 'nope.yaml', C.MANIFEST_FILE, cwd=path)
+    git_commit(cwd=path)
+    update_rev = git.head_rev(path)
+
+    config['rev'] = rev
+    write_config('.', config)
+    with open(C.CONFIG_FILE) as f:
+        before = f.read()
+    assert autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=False) == 0
+    with open(C.CONFIG_FILE) as f:
+        after = f.read()
+    assert before != after
+    assert update_rev in after
+
+
+def test_autoupdate_out_of_date_repo(out_of_date, tmpdir, store):
+    fmt = (
+        'repos:\n'
+        '-   repo: {}\n'
+        '    rev: {}\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(fmt.format(out_of_date.path, out_of_date.original_rev))
+
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=False) == 0
+    assert cfg.read() == fmt.format(out_of_date.path, out_of_date.head_rev)
+
+
+def test_autoupdate_only_one_to_update(up_to_date, out_of_date, tmpdir, store):
+    fmt = (
+        'repos:\n'
+        '-   repo: {}\n'
+        '    rev: {}\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '-   repo: {}\n'
+        '    rev: {}\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    before = fmt.format(
+        up_to_date, git.head_rev(up_to_date),
+        out_of_date.path, out_of_date.original_rev,
+    )
+    cfg.write(before)
+
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=False) == 0
+    assert cfg.read() == fmt.format(
+        up_to_date, git.head_rev(up_to_date),
+        out_of_date.path, out_of_date.head_rev,
+    )
+
+
+def test_autoupdate_out_of_date_repo_with_correct_repo_name(
+        out_of_date, in_tmpdir, store,
+):
+    stale_config = make_config_from_repo(
+        out_of_date.path, rev=out_of_date.original_rev, check=False,
+    )
+    local_config = sample_local_config()
+    config = {'repos': [stale_config, local_config]}
+    write_config('.', config)
+
+    with open(C.CONFIG_FILE) as f:
+        before = f.read()
+    repo_name = f'file://{out_of_date.path}'
+    ret = autoupdate(
+        C.CONFIG_FILE, store, freeze=False, tags_only=False,
+        repos=(repo_name,),
+    )
+    with open(C.CONFIG_FILE) as f:
+        after = f.read()
+    assert ret == 0
+    assert before != after
+    assert out_of_date.head_rev in after
+    assert 'local' in after
+
+
+def test_autoupdate_out_of_date_repo_with_wrong_repo_name(
+        out_of_date, in_tmpdir, store,
+):
+    config = make_config_from_repo(
+        out_of_date.path, rev=out_of_date.original_rev, check=False,
+    )
+    write_config('.', config)
+
+    with open(C.CONFIG_FILE) as f:
+        before = f.read()
+    # It will not update it, because the name doesn't match
+    ret = autoupdate(
+        C.CONFIG_FILE, store, freeze=False, tags_only=False,
+        repos=('dne',),
+    )
+    with open(C.CONFIG_FILE) as f:
+        after = f.read()
+    assert ret == 0
+    assert before == after
+
+
+def test_does_not_reformat(tmpdir, out_of_date, store):
+    fmt = (
+        'repos:\n'
+        '-   repo: {}\n'
+        '    rev: {}  # definitely the version I want!\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        # These args are because reasons!\n'
+        '        args: [foo, bar, baz]\n'
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(fmt.format(out_of_date.path, out_of_date.original_rev))
+
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=False) == 0
+    expected = fmt.format(out_of_date.path, out_of_date.head_rev)
+    assert cfg.read() == expected
+
+
+def test_loses_formatting_when_not_detectable(out_of_date, store, tmpdir):
+    """A best-effort attempt is made at updating rev without rewriting
+    formatting.  When the original formatting cannot be detected, this
+    is abandoned.
+    """
+    config = (
+        'repos: [\n'
+        '    {{\n'
+        '        repo: {}, rev: {},\n'
+        '        hooks: [\n'
+        '            # A comment!\n'
+        '            {{id: foo}},\n'
+        '        ],\n'
+        '    }}\n'
+        ']\n'.format(
+            shlex.quote(out_of_date.path), out_of_date.original_rev,
+        )
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(config)
+
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=False) == 0
+    expected = (
+        f'repos:\n'
+        f'-   repo: {out_of_date.path}\n'
+        f'    rev: {out_of_date.head_rev}\n'
+        f'    hooks:\n'
+        f'    -   id: foo\n'
+    )
+    assert cfg.read() == expected
+
+
+def test_autoupdate_tagged_repo(tagged, in_tmpdir, store):
+    config = make_config_from_repo(tagged.path, rev=tagged.original_rev)
+    write_config('.', config)
+
+    assert autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=False) == 0
+    with open(C.CONFIG_FILE) as f:
+        assert 'v1.2.3' in f.read()
+
+
+def test_autoupdate_freeze(tagged, in_tmpdir, store):
+    config = make_config_from_repo(tagged.path, rev=tagged.original_rev)
+    write_config('.', config)
+
+    assert autoupdate(C.CONFIG_FILE, store, freeze=True, tags_only=False) == 0
+    with open(C.CONFIG_FILE) as f:
+        expected = f'rev: {tagged.head_rev}  # frozen: v1.2.3'
+        assert expected in f.read()
+
+    # if we un-freeze it should remove the frozen comment
+    assert autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=False) == 0
+    with open(C.CONFIG_FILE) as f:
+        assert 'rev: v1.2.3\n' in f.read()
+
+
+def test_autoupdate_tags_only(tagged, in_tmpdir, store):
+    # add some commits after the tag
+    git_commit(cwd=tagged.path)
+
+    config = make_config_from_repo(tagged.path, rev=tagged.original_rev)
+    write_config('.', config)
+
+    assert autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=True) == 0
+    with open(C.CONFIG_FILE) as f:
+        assert 'v1.2.3' in f.read()
+
+
+def test_autoupdate_latest_no_config(out_of_date, in_tmpdir, store):
+    config = make_config_from_repo(
+        out_of_date.path, rev=out_of_date.original_rev,
+    )
+    write_config('.', config)
+
+    cmd_output('git', 'rm', '-r', ':/', cwd=out_of_date.path)
+    git_commit(cwd=out_of_date.path)
+
+    assert autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=False) == 1
+    with open(C.CONFIG_FILE) as f:
+        assert out_of_date.original_rev in f.read()
+
+
+def test_hook_disppearing_repo_raises(hook_disappearing, store):
+    config = make_config_from_repo(
+        hook_disappearing.path,
+        rev=hook_disappearing.original_rev,
+        hooks=[{'id': 'foo'}],
+    )
+    info = RevInfo.from_config(config).update(tags_only=False, freeze=False)
+    with pytest.raises(RepositoryCannotBeUpdatedError):
+        _check_hooks_still_exist_at_rev(config, info, store)
+
+
+def test_autoupdate_hook_disappearing_repo(hook_disappearing, tmpdir, store):
+    contents = (
+        f'repos:\n'
+        f'-   repo: {hook_disappearing.path}\n'
+        f'    rev: {hook_disappearing.original_rev}\n'
+        f'    hooks:\n'
+        f'    -   id: foo\n'
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(contents)
+
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=False) == 1
+    assert cfg.read() == contents
+
+
+def test_autoupdate_local_hooks(in_git_dir, store):
+    config = sample_local_config()
+    add_config_to_repo('.', config)
+    assert autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=False) == 0
+    new_config_writen = read_config('.')
+    assert len(new_config_writen['repos']) == 1
+    assert new_config_writen['repos'][0] == config
+
+
+def test_autoupdate_local_hooks_with_out_of_date_repo(
+        out_of_date, in_tmpdir, store,
+):
+    stale_config = make_config_from_repo(
+        out_of_date.path, rev=out_of_date.original_rev, check=False,
+    )
+    local_config = sample_local_config()
+    config = {'repos': [local_config, stale_config]}
+    write_config('.', config)
+    assert autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=False) == 0
+    new_config_writen = read_config('.')
+    assert len(new_config_writen['repos']) == 2
+    assert new_config_writen['repos'][0] == local_config
+
+
+def test_autoupdate_meta_hooks(tmpdir, store):
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(
+        'repos:\n'
+        '-   repo: meta\n'
+        '    hooks:\n'
+        '    -   id: check-useless-excludes\n',
+    )
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=True) == 0
+    assert cfg.read() == (
+        'repos:\n'
+        '-   repo: meta\n'
+        '    hooks:\n'
+        '    -   id: check-useless-excludes\n'
+    )
+
+
+def test_updates_old_format_to_new_format(tmpdir, capsys, store):
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(
+        '-   repo: local\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        name: foo\n'
+        '        entry: ./bin/foo.sh\n'
+        '        language: script\n',
+    )
+    assert autoupdate(str(cfg), store, freeze=False, tags_only=True) == 0
+    contents = cfg.read()
+    assert contents == (
+        'repos:\n'
+        '-   repo: local\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        name: foo\n'
+        '        entry: ./bin/foo.sh\n'
+        '        language: script\n'
+    )
+    out, _ = capsys.readouterr()
+    assert out == 'Configuration has been migrated.\n'
diff --git a/tests/commands/clean_test.py b/tests/commands/clean_test.py
new file mode 100644
index 0000000..955a6bc
--- /dev/null
+++ b/tests/commands/clean_test.py
@@ -0,0 +1,33 @@
+import os.path
+from unittest import mock
+
+import pytest
+
+from pre_commit.commands.clean import clean
+
+
+@pytest.fixture(autouse=True)
+def fake_old_dir(tempdir_factory):
+    fake_old_dir = tempdir_factory.get()
+
+    def _expanduser(path, *args, **kwargs):
+        assert path == '~/.pre-commit'
+        return fake_old_dir
+
+    with mock.patch.object(os.path, 'expanduser', side_effect=_expanduser):
+        yield fake_old_dir
+
+
+def test_clean(store, fake_old_dir):
+    assert os.path.exists(fake_old_dir)
+    assert os.path.exists(store.directory)
+    clean(store)
+    assert not os.path.exists(fake_old_dir)
+    assert not os.path.exists(store.directory)
+
+
+def test_clean_idempotent(store):
+    clean(store)
+    assert not os.path.exists(store.directory)
+    clean(store)
+    assert not os.path.exists(store.directory)
diff --git a/tests/commands/gc_test.py b/tests/commands/gc_test.py
new file mode 100644
index 0000000..02b3694
--- /dev/null
+++ b/tests/commands/gc_test.py
@@ -0,0 +1,161 @@
+import os
+
+import pre_commit.constants as C
+from pre_commit import git
+from pre_commit.clientlib import load_config
+from pre_commit.commands.autoupdate import autoupdate
+from pre_commit.commands.gc import gc
+from pre_commit.commands.install_uninstall import install_hooks
+from pre_commit.repository import all_hooks
+from testing.fixtures import make_config_from_repo
+from testing.fixtures import make_repo
+from testing.fixtures import modify_config
+from testing.fixtures import sample_local_config
+from testing.fixtures import sample_meta_config
+from testing.fixtures import write_config
+from testing.util import git_commit
+
+
+def _repo_count(store):
+    return len(store.select_all_repos())
+
+
+def _config_count(store):
+    return len(store.select_all_configs())
+
+
+def _remove_config_assert_cleared(store, cap_out):
+    os.remove(C.CONFIG_FILE)
+    assert not gc(store)
+    assert _config_count(store) == 0
+    assert _repo_count(store) == 0
+    assert cap_out.get().splitlines()[-1] == '1 repo(s) removed.'
+
+
+def test_gc(tempdir_factory, store, in_git_dir, cap_out):
+    path = make_repo(tempdir_factory, 'script_hooks_repo')
+    old_rev = git.head_rev(path)
+    git_commit(cwd=path)
+
+    write_config('.', make_config_from_repo(path, rev=old_rev))
+    store.mark_config_used(C.CONFIG_FILE)
+
+    # update will clone both the old and new repo, making the old one gc-able
+    install_hooks(C.CONFIG_FILE, store)
+    assert not autoupdate(C.CONFIG_FILE, store, freeze=False, tags_only=False)
+
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 2
+    assert not gc(store)
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 1
+    assert cap_out.get().splitlines()[-1] == '1 repo(s) removed.'
+
+    _remove_config_assert_cleared(store, cap_out)
+
+
+def test_gc_repo_not_cloned(tempdir_factory, store, in_git_dir, cap_out):
+    path = make_repo(tempdir_factory, 'script_hooks_repo')
+    write_config('.', make_config_from_repo(path))
+    store.mark_config_used(C.CONFIG_FILE)
+
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 0
+    assert not gc(store)
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 0
+    assert cap_out.get().splitlines()[-1] == '0 repo(s) removed.'
+
+
+def test_gc_meta_repo_does_not_crash(store, in_git_dir, cap_out):
+    write_config('.', sample_meta_config())
+    store.mark_config_used(C.CONFIG_FILE)
+    assert not gc(store)
+    assert cap_out.get().splitlines()[-1] == '0 repo(s) removed.'
+
+
+def test_gc_local_repo_does_not_crash(store, in_git_dir, cap_out):
+    write_config('.', sample_local_config())
+    store.mark_config_used(C.CONFIG_FILE)
+    assert not gc(store)
+    assert cap_out.get().splitlines()[-1] == '0 repo(s) removed.'
+
+
+def test_gc_unused_local_repo_with_env(store, in_git_dir, cap_out):
+    config = {
+        'repo': 'local',
+        'hooks': [{
+            'id': 'flake8', 'name': 'flake8', 'entry': 'flake8',
+            # a `language: python` local hook will create an environment
+            'types': ['python'], 'language': 'python',
+        }],
+    }
+    write_config('.', config)
+    store.mark_config_used(C.CONFIG_FILE)
+
+    # this causes the repositories to be created
+    all_hooks(load_config(C.CONFIG_FILE), store)
+
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 1
+    assert not gc(store)
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 1
+    assert cap_out.get().splitlines()[-1] == '0 repo(s) removed.'
+
+    _remove_config_assert_cleared(store, cap_out)
+
+
+def test_gc_config_with_missing_hook(
+        tempdir_factory, store, in_git_dir, cap_out,
+):
+    path = make_repo(tempdir_factory, 'script_hooks_repo')
+    write_config('.', make_config_from_repo(path))
+    store.mark_config_used(C.CONFIG_FILE)
+    # to trigger a clone
+    all_hooks(load_config(C.CONFIG_FILE), store)
+
+    with modify_config() as config:
+        # add a hook which does not exist, make sure we don't crash
+        config['repos'][0]['hooks'].append({'id': 'does-not-exist'})
+
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 1
+    assert not gc(store)
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 1
+    assert cap_out.get().splitlines()[-1] == '0 repo(s) removed.'
+
+    _remove_config_assert_cleared(store, cap_out)
+
+
+def test_gc_deletes_invalid_configs(store, in_git_dir, cap_out):
+    config = {'i am': 'invalid'}
+    write_config('.', config)
+    store.mark_config_used(C.CONFIG_FILE)
+
+    assert _config_count(store) == 1
+    assert not gc(store)
+    assert _config_count(store) == 0
+    assert cap_out.get().splitlines()[-1] == '0 repo(s) removed.'
+
+
+def test_invalid_manifest_gcd(tempdir_factory, store, in_git_dir, cap_out):
+    # clean up repos from old pre-commit versions
+    path = make_repo(tempdir_factory, 'script_hooks_repo')
+    write_config('.', make_config_from_repo(path))
+    store.mark_config_used(C.CONFIG_FILE)
+
+    # trigger a clone
+    install_hooks(C.CONFIG_FILE, store)
+
+    # we'll "break" the manifest to simulate an old version clone
+    (_, _, path), = store.select_all_repos()
+    os.remove(os.path.join(path, C.MANIFEST_FILE))
+
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 1
+    assert not gc(store)
+    assert _config_count(store) == 1
+    assert _repo_count(store) == 0
+    assert cap_out.get().splitlines()[-1] == '1 repo(s) removed.'
diff --git a/tests/commands/hook_impl_test.py b/tests/commands/hook_impl_test.py
new file mode 100644
index 0000000..032fa8f
--- /dev/null
+++ b/tests/commands/hook_impl_test.py
@@ -0,0 +1,235 @@
+import subprocess
+import sys
+from unittest import mock
+
+import pytest
+
+import pre_commit.constants as C
+from pre_commit import git
+from pre_commit.commands import hook_impl
+from pre_commit.envcontext import envcontext
+from pre_commit.util import cmd_output
+from pre_commit.util import make_executable
+from testing.fixtures import git_dir
+from testing.fixtures import sample_local_config
+from testing.fixtures import write_config
+from testing.util import cwd
+from testing.util import git_commit
+
+
+def test_validate_config_file_exists(tmpdir):
+    cfg = tmpdir.join(C.CONFIG_FILE).ensure()
+    hook_impl._validate_config(0, cfg, True)
+
+
+def test_validate_config_missing(capsys):
+    with pytest.raises(SystemExit) as excinfo:
+        hook_impl._validate_config(123, 'DNE.yaml', False)
+    ret, = excinfo.value.args
+    assert ret == 1
+    assert capsys.readouterr().out == (
+        'No DNE.yaml file was found\n'
+        '- To temporarily silence this, run '
+        '`PRE_COMMIT_ALLOW_NO_CONFIG=1 git ...`\n'
+        '- To permanently silence this, install pre-commit with the '
+        '--allow-missing-config option\n'
+        '- To uninstall pre-commit run `pre-commit uninstall`\n'
+    )
+
+
+def test_validate_config_skip_missing_config(capsys):
+    with pytest.raises(SystemExit) as excinfo:
+        hook_impl._validate_config(123, 'DNE.yaml', True)
+    ret, = excinfo.value.args
+    assert ret == 123
+    expected = '`DNE.yaml` config file not found. Skipping `pre-commit`.\n'
+    assert capsys.readouterr().out == expected
+
+
+def test_validate_config_skip_via_env_variable(capsys):
+    with pytest.raises(SystemExit) as excinfo:
+        with envcontext((('PRE_COMMIT_ALLOW_NO_CONFIG', '1'),)):
+            hook_impl._validate_config(0, 'DNE.yaml', False)
+    ret, = excinfo.value.args
+    assert ret == 0
+    expected = '`DNE.yaml` config file not found. Skipping `pre-commit`.\n'
+    assert capsys.readouterr().out == expected
+
+
+def test_run_legacy_does_not_exist(tmpdir):
+    retv, stdin = hook_impl._run_legacy('pre-commit', tmpdir, ())
+    assert (retv, stdin) == (0, b'')
+
+
+def test_run_legacy_executes_legacy_script(tmpdir, capfd):
+    hook = tmpdir.join('pre-commit.legacy')
+    hook.write('#!/usr/bin/env bash\necho hi "$@"\nexit 1\n')
+    make_executable(hook)
+    retv, stdin = hook_impl._run_legacy('pre-commit', tmpdir, ('arg1', 'arg2'))
+    assert capfd.readouterr().out.strip() == 'hi arg1 arg2'
+    assert (retv, stdin) == (1, b'')
+
+
+def test_run_legacy_pre_push_returns_stdin(tmpdir):
+    with mock.patch.object(sys.stdin.buffer, 'read', return_value=b'stdin'):
+        retv, stdin = hook_impl._run_legacy('pre-push', tmpdir, ())
+    assert (retv, stdin) == (0, b'stdin')
+
+
+def test_run_legacy_recursive(tmpdir):
+    hook = tmpdir.join('pre-commit.legacy').ensure()
+    make_executable(hook)
+
+    # simulate a call being recursive
+    def call(*_, **__):
+        return hook_impl._run_legacy('pre-commit', tmpdir, ())
+
+    with mock.patch.object(subprocess, 'run', call):
+        with pytest.raises(SystemExit):
+            call()
+
+
+def test_run_ns_pre_commit():
+    ns = hook_impl._run_ns('pre-commit', True, (), b'')
+    assert ns is not None
+    assert ns.hook_stage == 'commit'
+    assert ns.color is True
+
+
+def test_run_ns_commit_msg():
+    ns = hook_impl._run_ns('commit-msg', False, ('.git/COMMIT_MSG',), b'')
+    assert ns is not None
+    assert ns.hook_stage == 'commit-msg'
+    assert ns.color is False
+    assert ns.commit_msg_filename == '.git/COMMIT_MSG'
+
+
+def test_run_ns_post_checkout():
+    ns = hook_impl._run_ns('post-checkout', True, ('a', 'b', 'c'), b'')
+    assert ns is not None
+    assert ns.hook_stage == 'post-checkout'
+    assert ns.color is True
+    assert ns.from_ref == 'a'
+    assert ns.to_ref == 'b'
+    assert ns.checkout_type == 'c'
+
+
+@pytest.fixture
+def push_example(tempdir_factory):
+    src = git_dir(tempdir_factory)
+    git_commit(cwd=src)
+    src_head = git.head_rev(src)
+
+    clone = tempdir_factory.get()
+    cmd_output('git', 'clone', src, clone)
+    git_commit(cwd=clone)
+    clone_head = git.head_rev(clone)
+    return (src, src_head, clone, clone_head)
+
+
+def test_run_ns_pre_push_updating_branch(push_example):
+    src, src_head, clone, clone_head = push_example
+
+    with cwd(clone):
+        args = ('origin', src)
+        stdin = f'HEAD {clone_head} refs/heads/b {src_head}\n'.encode()
+        ns = hook_impl._run_ns('pre-push', False, args, stdin)
+
+    assert ns is not None
+    assert ns.hook_stage == 'push'
+    assert ns.color is False
+    assert ns.remote_name == 'origin'
+    assert ns.remote_url == src
+    assert ns.from_ref == src_head
+    assert ns.to_ref == clone_head
+    assert ns.all_files is False
+
+
+def test_run_ns_pre_push_new_branch(push_example):
+    src, src_head, clone, clone_head = push_example
+
+    with cwd(clone):
+        args = ('origin', src)
+        stdin = f'HEAD {clone_head} refs/heads/b {hook_impl.Z40}\n'.encode()
+        ns = hook_impl._run_ns('pre-push', False, args, stdin)
+
+    assert ns is not None
+    assert ns.from_ref == src_head
+    assert ns.to_ref == clone_head
+
+
+def test_run_ns_pre_push_new_branch_existing_rev(push_example):
+    src, src_head, clone, _ = push_example
+
+    with cwd(clone):
+        args = ('origin', src)
+        stdin = f'HEAD {src_head} refs/heads/b2 {hook_impl.Z40}\n'.encode()
+        ns = hook_impl._run_ns('pre-push', False, args, stdin)
+
+    assert ns is None
+
+
+def test_pushing_orphan_branch(push_example):
+    src, src_head, clone, _ = push_example
+
+    cmd_output('git', 'checkout', '--orphan', 'b2', cwd=clone)
+    git_commit(cwd=clone, msg='something else to get unique hash')
+    clone_rev = git.head_rev(clone)
+
+    with cwd(clone):
+        args = ('origin', src)
+        stdin = f'HEAD {clone_rev} refs/heads/b2 {hook_impl.Z40}\n'.encode()
+        ns = hook_impl._run_ns('pre-push', False, args, stdin)
+
+    assert ns is not None
+    assert ns.all_files is True
+
+
+def test_run_ns_pre_push_deleting_branch(push_example):
+    src, src_head, clone, _ = push_example
+
+    with cwd(clone):
+        args = ('origin', src)
+        stdin = f'(delete) {hook_impl.Z40} refs/heads/b {src_head}'.encode()
+        ns = hook_impl._run_ns('pre-push', False, args, stdin)
+
+    assert ns is None
+
+
+def test_hook_impl_main_noop_pre_push(cap_out, store, push_example):
+    src, src_head, clone, _ = push_example
+
+    stdin = f'(delete) {hook_impl.Z40} refs/heads/b {src_head}'.encode()
+    with mock.patch.object(sys.stdin.buffer, 'read', return_value=stdin):
+        with cwd(clone):
+            write_config('.', sample_local_config())
+            ret = hook_impl.hook_impl(
+                store,
+                config=C.CONFIG_FILE,
+                color=False,
+                hook_type='pre-push',
+                hook_dir='.git/hooks',
+                skip_on_missing_config=False,
+                args=('origin', src),
+            )
+    assert ret == 0
+    assert cap_out.get() == ''
+
+
+def test_hook_impl_main_runs_hooks(cap_out, tempdir_factory, store):
+    with cwd(git_dir(tempdir_factory)):
+        write_config('.', sample_local_config())
+        ret = hook_impl.hook_impl(
+            store,
+            config=C.CONFIG_FILE,
+            color=False,
+            hook_type='pre-commit',
+            hook_dir='.git/hooks',
+            skip_on_missing_config=False,
+            args=(),
+        )
+    assert ret == 0
+    expected = '''\
+Block if "DO NOT COMMIT" is found....................(no files to check)Skipped
+'''
+    assert cap_out.get() == expected
diff --git a/tests/commands/init_templatedir_test.py b/tests/commands/init_templatedir_test.py
new file mode 100644
index 0000000..d14a171
--- /dev/null
+++ b/tests/commands/init_templatedir_test.py
@@ -0,0 +1,92 @@
+import os.path
+from unittest import mock
+
+import pre_commit.constants as C
+from pre_commit.commands.init_templatedir import init_templatedir
+from pre_commit.envcontext import envcontext
+from pre_commit.util import cmd_output
+from testing.fixtures import git_dir
+from testing.fixtures import make_consuming_repo
+from testing.util import cmd_output_mocked_pre_commit_home
+from testing.util import cwd
+from testing.util import git_commit
+
+
+def test_init_templatedir(tmpdir, tempdir_factory, store, cap_out):
+    target = str(tmpdir.join('tmpl'))
+    init_templatedir(C.CONFIG_FILE, store, target, hook_types=['pre-commit'])
+    lines = cap_out.get().splitlines()
+    assert lines[0].startswith('pre-commit installed at ')
+    assert lines[1] == (
+        '[WARNING] `init.templateDir` not set to the target directory'
+    )
+    assert lines[2].startswith(
+        '[WARNING] maybe `git config --global init.templateDir',
+    )
+
+    with envcontext((('GIT_TEMPLATE_DIR', target),)):
+        path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+
+        with cwd(path):
+            retcode, output = git_commit(
+                fn=cmd_output_mocked_pre_commit_home,
+                tempdir_factory=tempdir_factory,
+            )
+            assert retcode == 0
+            assert 'Bash hook....' in output
+
+
+def test_init_templatedir_already_set(tmpdir, tempdir_factory, store, cap_out):
+    target = str(tmpdir.join('tmpl'))
+    tmp_git_dir = git_dir(tempdir_factory)
+    with cwd(tmp_git_dir):
+        cmd_output('git', 'config', 'init.templateDir', target)
+        init_templatedir(
+            C.CONFIG_FILE, store, target, hook_types=['pre-commit'],
+        )
+
+    lines = cap_out.get().splitlines()
+    assert len(lines) == 1
+    assert lines[0].startswith('pre-commit installed at')
+
+
+def test_init_templatedir_not_set(tmpdir, store, cap_out):
+    # set HOME to ignore the current `.gitconfig`
+    with envcontext((('HOME', str(tmpdir)),)):
+        with tmpdir.join('tmpl').ensure_dir().as_cwd():
+            # we have not set init.templateDir so this should produce a warning
+            init_templatedir(
+                C.CONFIG_FILE, store, '.', hook_types=['pre-commit'],
+            )
+
+    lines = cap_out.get().splitlines()
+    assert len(lines) == 3
+    assert lines[1] == (
+        '[WARNING] `init.templateDir` not set to the target directory'
+    )
+
+
+def test_init_templatedir_expanduser(tmpdir, tempdir_factory, store, cap_out):
+    target = str(tmpdir.join('tmpl'))
+    tmp_git_dir = git_dir(tempdir_factory)
+    with cwd(tmp_git_dir):
+        cmd_output('git', 'config', 'init.templateDir', '~/templatedir')
+        with mock.patch.object(os.path, 'expanduser', return_value=target):
+            init_templatedir(
+                C.CONFIG_FILE, store, target, hook_types=['pre-commit'],
+            )
+
+    lines = cap_out.get().splitlines()
+    assert len(lines) == 1
+    assert lines[0].startswith('pre-commit installed at')
+
+
+def test_init_templatedir_hookspath_set(tmpdir, tempdir_factory, store):
+    target = tmpdir.join('tmpl')
+    tmp_git_dir = git_dir(tempdir_factory)
+    with cwd(tmp_git_dir):
+        cmd_output('git', 'config', '--local', 'core.hooksPath', 'hooks')
+        init_templatedir(
+            C.CONFIG_FILE, store, target, hook_types=['pre-commit'],
+        )
+    assert target.join('hooks/pre-commit').exists()
diff --git a/tests/commands/install_uninstall_test.py b/tests/commands/install_uninstall_test.py
new file mode 100644
index 0000000..66b9190
--- /dev/null
+++ b/tests/commands/install_uninstall_test.py
@@ -0,0 +1,901 @@
+import os.path
+import re
+import sys
+from unittest import mock
+
+import pre_commit.constants as C
+from pre_commit import git
+from pre_commit.commands import install_uninstall
+from pre_commit.commands.install_uninstall import CURRENT_HASH
+from pre_commit.commands.install_uninstall import install
+from pre_commit.commands.install_uninstall import install_hooks
+from pre_commit.commands.install_uninstall import is_our_script
+from pre_commit.commands.install_uninstall import PRIOR_HASHES
+from pre_commit.commands.install_uninstall import shebang
+from pre_commit.commands.install_uninstall import uninstall
+from pre_commit.parse_shebang import find_executable
+from pre_commit.util import cmd_output
+from pre_commit.util import make_executable
+from pre_commit.util import resource_text
+from testing.fixtures import add_config_to_repo
+from testing.fixtures import git_dir
+from testing.fixtures import make_consuming_repo
+from testing.fixtures import remove_config_from_repo
+from testing.fixtures import write_config
+from testing.util import cmd_output_mocked_pre_commit_home
+from testing.util import cwd
+from testing.util import git_commit
+
+
+def test_is_not_script():
+    assert is_our_script('setup.py') is False
+
+
+def test_is_script():
+    assert is_our_script('pre_commit/resources/hook-tmpl')
+
+
+def test_is_previous_pre_commit(tmpdir):
+    f = tmpdir.join('foo')
+    f.write(f'{PRIOR_HASHES[0]}\n')
+    assert is_our_script(f.strpath)
+
+
+def patch_platform(platform):
+    return mock.patch.object(sys, 'platform', platform)
+
+
+def patch_lookup_path(path):
+    return mock.patch.object(install_uninstall, 'POSIX_SEARCH_PATH', path)
+
+
+def patch_sys_exe(exe):
+    return mock.patch.object(install_uninstall, 'SYS_EXE', exe)
+
+
+def test_shebang_windows():
+    with patch_platform('win32'), patch_sys_exe('python.exe'):
+        assert shebang() == '#!/usr/bin/env python.exe'
+
+
+def test_shebang_posix_not_on_path():
+    with patch_platform('posix'), patch_lookup_path(()):
+        with patch_sys_exe('python3.6'):
+            assert shebang() == '#!/usr/bin/env python3.6'
+
+
+def test_shebang_posix_on_path(tmpdir):
+    exe = tmpdir.join(f'python{sys.version_info[0]}').ensure()
+    make_executable(exe)
+
+    with patch_platform('posix'), patch_lookup_path((tmpdir.strpath,)):
+        with patch_sys_exe('python'):
+            assert shebang() == f'#!/usr/bin/env python{sys.version_info[0]}'
+
+
+def test_install_pre_commit(in_git_dir, store):
+    assert not install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+    assert os.access(in_git_dir.join('.git/hooks/pre-commit').strpath, os.X_OK)
+
+    assert not install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+    assert os.access(in_git_dir.join('.git/hooks/pre-push').strpath, os.X_OK)
+
+
+def test_install_hooks_directory_not_present(in_git_dir, store):
+    # Simulate some git clients which don't make .git/hooks #234
+    if in_git_dir.join('.git/hooks').exists():  # pragma: no cover (odd git)
+        in_git_dir.join('.git/hooks').remove()
+    install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+    assert in_git_dir.join('.git/hooks/pre-commit').exists()
+
+
+def test_install_multiple_hooks_at_once(in_git_dir, store):
+    install(C.CONFIG_FILE, store, hook_types=['pre-commit', 'pre-push'])
+    assert in_git_dir.join('.git/hooks/pre-commit').exists()
+    assert in_git_dir.join('.git/hooks/pre-push').exists()
+    uninstall(hook_types=['pre-commit', 'pre-push'])
+    assert not in_git_dir.join('.git/hooks/pre-commit').exists()
+    assert not in_git_dir.join('.git/hooks/pre-push').exists()
+
+
+def test_install_refuses_core_hookspath(in_git_dir, store):
+    cmd_output('git', 'config', '--local', 'core.hooksPath', 'hooks')
+    assert install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+
+
+def test_install_hooks_dead_symlink(in_git_dir, store):
+    hook = in_git_dir.join('.git/hooks').ensure_dir().join('pre-commit')
+    os.symlink('/fake/baz', hook.strpath)
+    install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+    assert hook.exists()
+
+
+def test_uninstall_does_not_blow_up_when_not_there(in_git_dir):
+    assert uninstall(hook_types=['pre-commit']) == 0
+
+
+def test_uninstall(in_git_dir, store):
+    assert not in_git_dir.join('.git/hooks/pre-commit').exists()
+    install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+    assert in_git_dir.join('.git/hooks/pre-commit').exists()
+    uninstall(hook_types=['pre-commit'])
+    assert not in_git_dir.join('.git/hooks/pre-commit').exists()
+
+
+def _get_commit_output(tempdir_factory, touch_file='foo', **kwargs):
+    open(touch_file, 'a').close()
+    cmd_output('git', 'add', touch_file)
+    return git_commit(
+        fn=cmd_output_mocked_pre_commit_home,
+        retcode=None,
+        tempdir_factory=tempdir_factory,
+        **kwargs,
+    )
+
+
+# osx does this different :(
+FILES_CHANGED = (
+    r'('
+    r' 1 file changed, 0 insertions\(\+\), 0 deletions\(-\)\n'
+    r'|'
+    r' 0 files changed\n'
+    r')'
+)
+
+
+NORMAL_PRE_COMMIT_RUN = re.compile(
+    fr'^\[INFO\] Initializing environment for .+\.\n'
+    fr'Bash hook\.+Passed\n'
+    fr'\[master [a-f0-9]{{7}}\] commit!\n'
+    fr'{FILES_CHANGED}'
+    fr' create mode 100644 foo\n$',
+)
+
+
+def test_install_pre_commit_and_run(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def test_install_pre_commit_and_run_custom_path(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        cmd_output('git', 'mv', C.CONFIG_FILE, 'custom.yaml')
+        git_commit(cwd=path)
+        assert install('custom.yaml', store, hook_types=['pre-commit']) == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def test_install_in_submodule_and_run(tempdir_factory, store):
+    src_path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    parent_path = git_dir(tempdir_factory)
+    cmd_output('git', 'submodule', 'add', src_path, 'sub', cwd=parent_path)
+    git_commit(cwd=parent_path)
+
+    sub_pth = os.path.join(parent_path, 'sub')
+    with cwd(sub_pth):
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def test_install_in_worktree_and_run(tempdir_factory, store):
+    src_path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    path = tempdir_factory.get()
+    cmd_output('git', '-C', src_path, 'branch', '-m', 'notmaster')
+    cmd_output('git', '-C', src_path, 'worktree', 'add', path, '-b', 'master')
+
+    with cwd(path):
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def test_commit_am(tempdir_factory, store):
+    """Regression test for #322."""
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        # Make an unstaged change
+        open('unstaged', 'w').close()
+        cmd_output('git', 'add', '.')
+        git_commit(cwd=path)
+        with open('unstaged', 'w') as foo_file:
+            foo_file.write('Oh hai')
+
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+
+
+def test_unicode_merge_commit_message(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+        cmd_output('git', 'checkout', 'master', '-b', 'foo')
+        git_commit('-n', cwd=path)
+        cmd_output('git', 'checkout', 'master')
+        cmd_output('git', 'merge', 'foo', '--no-ff', '--no-commit', '-m', '☃')
+        # Used to crash
+        git_commit(
+            '--no-edit',
+            msg=None,
+            fn=cmd_output_mocked_pre_commit_home,
+            tempdir_factory=tempdir_factory,
+        )
+
+
+def test_install_idempotent(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def _path_without_us():
+    # Choose a path which *probably* doesn't include us
+    env = dict(os.environ)
+    exe = find_executable('pre-commit', _environ=env)
+    while exe:
+        parts = env['PATH'].split(os.pathsep)
+        after = [x for x in parts if x.lower() != os.path.dirname(exe).lower()]
+        if parts == after:
+            raise AssertionError(exe, parts)
+        env['PATH'] = os.pathsep.join(after)
+        exe = find_executable('pre-commit', _environ=env)
+    return env['PATH']
+
+
+def test_environment_not_sourced(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        assert not install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+        # simulate deleting the virtualenv by rewriting the exe
+        hook = os.path.join(path, '.git/hooks/pre-commit')
+        with open(hook) as f:
+            src = f.read()
+        src = re.sub(
+            '\nINSTALL_PYTHON =.*\n',
+            '\nINSTALL_PYTHON = "/dne"\n',
+            src,
+        )
+        with open(hook, 'w') as f:
+            f.write(src)
+
+        # Use a specific homedir to ignore --user installs
+        homedir = tempdir_factory.get()
+        ret, out = git_commit(
+            env={
+                'HOME': homedir,
+                'PATH': _path_without_us(),
+                # Git needs this to make a commit
+                'GIT_AUTHOR_NAME': os.environ['GIT_AUTHOR_NAME'],
+                'GIT_COMMITTER_NAME': os.environ['GIT_COMMITTER_NAME'],
+                'GIT_AUTHOR_EMAIL': os.environ['GIT_AUTHOR_EMAIL'],
+                'GIT_COMMITTER_EMAIL': os.environ['GIT_COMMITTER_EMAIL'],
+            },
+            retcode=None,
+        )
+        assert ret == 1
+        assert out == (
+            '`pre-commit` not found.  '
+            'Did you forget to activate your virtualenv?\n'
+        )
+
+
+FAILING_PRE_COMMIT_RUN = re.compile(
+    r'^\[INFO\] Initializing environment for .+\.\n'
+    r'Failing hook\.+Failed\n'
+    r'- hook id: failing_hook\n'
+    r'- exit code: 1\n'
+    r'\n'
+    r'Fail\n'
+    r'foo\n'
+    r'\n$',
+)
+
+
+def test_failing_hooks_returns_nonzero(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'failing_hook_repo')
+    with cwd(path):
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 1
+        assert FAILING_PRE_COMMIT_RUN.match(output)
+
+
+EXISTING_COMMIT_RUN = re.compile(
+    fr'^legacy hook\n'
+    fr'\[master [a-f0-9]{{7}}\] commit!\n'
+    fr'{FILES_CHANGED}'
+    fr' create mode 100644 baz\n$',
+)
+
+
+def _write_legacy_hook(path):
+    os.makedirs(os.path.join(path, '.git/hooks'), exist_ok=True)
+    with open(os.path.join(path, '.git/hooks/pre-commit'), 'w') as f:
+        f.write(f'{shebang()}\nprint("legacy hook")\n')
+    make_executable(f.name)
+
+
+def test_install_existing_hooks_no_overwrite(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        _write_legacy_hook(path)
+
+        # Make sure we installed the "old" hook correctly
+        ret, output = _get_commit_output(tempdir_factory, touch_file='baz')
+        assert ret == 0
+        assert EXISTING_COMMIT_RUN.match(output)
+
+        # Now install pre-commit (no-overwrite)
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        # We should run both the legacy and pre-commit hooks
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert output.startswith('legacy hook\n')
+        assert NORMAL_PRE_COMMIT_RUN.match(output[len('legacy hook\n'):])
+
+
+def test_legacy_overwriting_legacy_hook(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        _write_legacy_hook(path)
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+        _write_legacy_hook(path)
+        # this previously crashed on windows.  See #1010
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+
+def test_install_existing_hook_no_overwrite_idempotent(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        _write_legacy_hook(path)
+
+        # Install twice
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        # We should run both the legacy and pre-commit hooks
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert output.startswith('legacy hook\n')
+        assert NORMAL_PRE_COMMIT_RUN.match(output[len('legacy hook\n'):])
+
+
+FAIL_OLD_HOOK = re.compile(
+    r'fail!\n'
+    r'\[INFO\] Initializing environment for .+\.\n'
+    r'Bash hook\.+Passed\n',
+)
+
+
+def test_failing_existing_hook_returns_1(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        # Write out a failing "old" hook
+        os.makedirs(os.path.join(path, '.git/hooks'), exist_ok=True)
+        with open(os.path.join(path, '.git/hooks/pre-commit'), 'w') as f:
+            f.write('#!/usr/bin/env bash\necho "fail!"\nexit 1\n')
+        make_executable(f.name)
+
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        # We should get a failure from the legacy hook
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 1
+        assert FAIL_OLD_HOOK.match(output)
+
+
+def test_install_overwrite_no_existing_hooks(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        assert not install(
+            C.CONFIG_FILE, store, hook_types=['pre-commit'], overwrite=True,
+        )
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def test_install_overwrite(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        _write_legacy_hook(path)
+        assert not install(
+            C.CONFIG_FILE, store, hook_types=['pre-commit'], overwrite=True,
+        )
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def test_uninstall_restores_legacy_hooks(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        _write_legacy_hook(path)
+
+        # Now install and uninstall pre-commit
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+        assert uninstall(hook_types=['pre-commit']) == 0
+
+        # Make sure we installed the "old" hook correctly
+        ret, output = _get_commit_output(tempdir_factory, touch_file='baz')
+        assert ret == 0
+        assert EXISTING_COMMIT_RUN.match(output)
+
+
+def test_replace_old_commit_script(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        # Install a script that looks like our old script
+        pre_commit_contents = resource_text('hook-tmpl')
+        new_contents = pre_commit_contents.replace(
+            CURRENT_HASH, PRIOR_HASHES[-1],
+        )
+
+        os.makedirs(os.path.join(path, '.git/hooks'), exist_ok=True)
+        with open(os.path.join(path, '.git/hooks/pre-commit'), 'w') as f:
+            f.write(new_contents)
+        make_executable(f.name)
+
+        # Install normally
+        assert install(C.CONFIG_FILE, store, hook_types=['pre-commit']) == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def test_uninstall_doesnt_remove_not_our_hooks(in_git_dir):
+    pre_commit = in_git_dir.join('.git/hooks').ensure_dir().join('pre-commit')
+    pre_commit.write('#!/usr/bin/env bash\necho 1\n')
+    make_executable(pre_commit.strpath)
+
+    assert uninstall(hook_types=['pre-commit']) == 0
+
+    assert pre_commit.exists()
+
+
+PRE_INSTALLED = re.compile(
+    fr'Bash hook\.+Passed\n'
+    fr'\[master [a-f0-9]{{7}}\] commit!\n'
+    fr'{FILES_CHANGED}'
+    fr' create mode 100644 foo\n$',
+)
+
+
+def test_installs_hooks_with_hooks_True(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        install(C.CONFIG_FILE, store, hook_types=['pre-commit'], hooks=True)
+        ret, output = _get_commit_output(
+            tempdir_factory, pre_commit_home=store.directory,
+        )
+
+        assert ret == 0
+        assert PRE_INSTALLED.match(output)
+
+
+def test_install_hooks_command(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+        install_hooks(C.CONFIG_FILE, store)
+        ret, output = _get_commit_output(
+            tempdir_factory, pre_commit_home=store.directory,
+        )
+
+        assert ret == 0
+        assert PRE_INSTALLED.match(output)
+
+
+def test_installed_from_venv(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+        # No environment so pre-commit is not on the path when running!
+        # Should still pick up the python from when we installed
+        ret, output = _get_commit_output(
+            tempdir_factory,
+            env={
+                'HOME': os.path.expanduser('~'),
+                'PATH': _path_without_us(),
+                'TERM': os.environ.get('TERM', ''),
+                # Windows needs this to import `random`
+                'SYSTEMROOT': os.environ.get('SYSTEMROOT', ''),
+                # Windows needs this to resolve executables
+                'PATHEXT': os.environ.get('PATHEXT', ''),
+                # Git needs this to make a commit
+                'GIT_AUTHOR_NAME': os.environ['GIT_AUTHOR_NAME'],
+                'GIT_COMMITTER_NAME': os.environ['GIT_COMMITTER_NAME'],
+                'GIT_AUTHOR_EMAIL': os.environ['GIT_AUTHOR_EMAIL'],
+                'GIT_COMMITTER_EMAIL': os.environ['GIT_COMMITTER_EMAIL'],
+            },
+        )
+        assert ret == 0
+        assert NORMAL_PRE_COMMIT_RUN.match(output)
+
+
+def _get_push_output(tempdir_factory, remote='origin', opts=()):
+    return cmd_output_mocked_pre_commit_home(
+        'git', 'push', remote, 'HEAD:new_branch', *opts,
+        tempdir_factory=tempdir_factory,
+        retcode=None,
+    )[:2]
+
+
+def test_pre_push_integration_failing(tempdir_factory, store):
+    upstream = make_consuming_repo(tempdir_factory, 'failing_hook_repo')
+    path = tempdir_factory.get()
+    cmd_output('git', 'clone', upstream, path)
+    with cwd(path):
+        install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+        # commit succeeds because pre-commit is only installed for pre-push
+        assert _get_commit_output(tempdir_factory)[0] == 0
+        assert _get_commit_output(tempdir_factory, touch_file='zzz')[0] == 0
+
+        retc, output = _get_push_output(tempdir_factory)
+        assert retc == 1
+        assert 'Failing hook' in output
+        assert 'Failed' in output
+        assert 'foo zzz' in output  # both filenames should be printed
+        assert 'hook id: failing_hook' in output
+
+
+def test_pre_push_integration_accepted(tempdir_factory, store):
+    upstream = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    path = tempdir_factory.get()
+    cmd_output('git', 'clone', upstream, path)
+    with cwd(path):
+        install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+        assert _get_commit_output(tempdir_factory)[0] == 0
+
+        retc, output = _get_push_output(tempdir_factory)
+        assert retc == 0
+        assert 'Bash hook' in output
+        assert 'Passed' in output
+
+
+def test_pre_push_force_push_without_fetch(tempdir_factory, store):
+    upstream = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    path1 = tempdir_factory.get()
+    path2 = tempdir_factory.get()
+    cmd_output('git', 'clone', upstream, path1)
+    cmd_output('git', 'clone', upstream, path2)
+    with cwd(path1):
+        assert _get_commit_output(tempdir_factory)[0] == 0
+        assert _get_push_output(tempdir_factory)[0] == 0
+
+    with cwd(path2):
+        install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+        assert _get_commit_output(tempdir_factory, msg='force!')[0] == 0
+
+        retc, output = _get_push_output(tempdir_factory, opts=('--force',))
+        assert retc == 0
+        assert 'Bash hook' in output
+        assert 'Passed' in output
+
+
+def test_pre_push_new_upstream(tempdir_factory, store):
+    upstream = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    upstream2 = git_dir(tempdir_factory)
+    path = tempdir_factory.get()
+    cmd_output('git', 'clone', upstream, path)
+    with cwd(path):
+        install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+        assert _get_commit_output(tempdir_factory)[0] == 0
+
+        cmd_output('git', 'remote', 'rename', 'origin', 'upstream')
+        cmd_output('git', 'remote', 'add', 'origin', upstream2)
+        retc, output = _get_push_output(tempdir_factory)
+        assert retc == 0
+        assert 'Bash hook' in output
+        assert 'Passed' in output
+
+
+def test_pre_push_environment_variables(tempdir_factory, store):
+    config = {
+        'repo': 'local',
+        'hooks': [
+            {
+                'id': 'print-remote-info',
+                'name': 'print remote info',
+                'entry': 'bash -c "echo remote: $PRE_COMMIT_REMOTE_NAME"',
+                'language': 'system',
+                'verbose': True,
+            },
+        ],
+    }
+
+    upstream = git_dir(tempdir_factory)
+    clone = tempdir_factory.get()
+    cmd_output('git', 'clone', upstream, clone)
+    add_config_to_repo(clone, config)
+    with cwd(clone):
+        install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+
+        cmd_output('git', 'remote', 'rename', 'origin', 'origin2')
+        retc, output = _get_push_output(tempdir_factory, remote='origin2')
+        assert retc == 0
+        assert '\nremote: origin2\n' in output
+
+
+def test_pre_push_integration_empty_push(tempdir_factory, store):
+    upstream = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    path = tempdir_factory.get()
+    cmd_output('git', 'clone', upstream, path)
+    with cwd(path):
+        install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+        _get_push_output(tempdir_factory)
+        retc, output = _get_push_output(tempdir_factory)
+        assert output == 'Everything up-to-date\n'
+        assert retc == 0
+
+
+def test_pre_push_legacy(tempdir_factory, store):
+    upstream = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    path = tempdir_factory.get()
+    cmd_output('git', 'clone', upstream, path)
+    with cwd(path):
+        os.makedirs(os.path.join(path, '.git/hooks'), exist_ok=True)
+        with open(os.path.join(path, '.git/hooks/pre-push'), 'w') as f:
+            f.write(
+                '#!/usr/bin/env bash\n'
+                'set -eu\n'
+                'read lr ls rr rs\n'
+                'test -n "$lr" -a -n "$ls" -a -n "$rr" -a -n "$rs"\n'
+                'echo legacy\n',
+            )
+        make_executable(f.name)
+
+        install(C.CONFIG_FILE, store, hook_types=['pre-push'])
+        assert _get_commit_output(tempdir_factory)[0] == 0
+
+        retc, output = _get_push_output(tempdir_factory)
+        assert retc == 0
+        first_line, _, third_line = output.splitlines()[:3]
+        assert first_line == 'legacy'
+        assert third_line.startswith('Bash hook')
+        assert third_line.endswith('Passed')
+
+
+def test_commit_msg_integration_failing(
+        commit_msg_repo, tempdir_factory, store,
+):
+    install(C.CONFIG_FILE, store, hook_types=['commit-msg'])
+    retc, out = _get_commit_output(tempdir_factory)
+    assert retc == 1
+    assert out == '''\
+Must have "Signed off by:"...............................................Failed
+- hook id: must-have-signoff
+- exit code: 1
+'''
+
+
+def test_commit_msg_integration_passing(
+        commit_msg_repo, tempdir_factory, store,
+):
+    install(C.CONFIG_FILE, store, hook_types=['commit-msg'])
+    msg = 'Hi\nSigned off by: me, lol'
+    retc, out = _get_commit_output(tempdir_factory, msg=msg)
+    assert retc == 0
+    first_line = out.splitlines()[0]
+    assert first_line.startswith('Must have "Signed off by:"...')
+    assert first_line.endswith('...Passed')
+
+
+def test_commit_msg_legacy(commit_msg_repo, tempdir_factory, store):
+    hook_path = os.path.join(commit_msg_repo, '.git/hooks/commit-msg')
+    os.makedirs(os.path.dirname(hook_path), exist_ok=True)
+    with open(hook_path, 'w') as hook_file:
+        hook_file.write(
+            '#!/usr/bin/env bash\n'
+            'set -eu\n'
+            'test -e "$1"\n'
+            'echo legacy\n',
+        )
+    make_executable(hook_path)
+
+    install(C.CONFIG_FILE, store, hook_types=['commit-msg'])
+
+    msg = 'Hi\nSigned off by: asottile'
+    retc, out = _get_commit_output(tempdir_factory, msg=msg)
+    assert retc == 0
+    first_line, second_line = out.splitlines()[:2]
+    assert first_line == 'legacy'
+    assert second_line.startswith('Must have "Signed off by:"...')
+
+
+def test_post_checkout_integration(tempdir_factory, store):
+    path = git_dir(tempdir_factory)
+    config = [
+        {
+            'repo': 'local',
+            'hooks': [{
+                'id': 'post-checkout',
+                'name': 'Post checkout',
+                'entry': 'bash -c "echo ${PRE_COMMIT_TO_REF}"',
+                'language': 'system',
+                'always_run': True,
+                'verbose': True,
+                'stages': ['post-checkout'],
+            }],
+        },
+        {'repo': 'meta', 'hooks': [{'id': 'identity'}]},
+    ]
+    write_config(path, config)
+    with cwd(path):
+        cmd_output('git', 'add', '.')
+        git_commit()
+
+        # add a file only on `feature`, it should not be passed to hooks
+        cmd_output('git', 'checkout', '-b', 'feature')
+        open('some_file', 'a').close()
+        cmd_output('git', 'add', '.')
+        git_commit()
+        cmd_output('git', 'checkout', 'master')
+
+        install(C.CONFIG_FILE, store, hook_types=['post-checkout'])
+        retc, _, stderr = cmd_output('git', 'checkout', 'feature')
+        assert stderr is not None
+        assert retc == 0
+        assert git.head_rev(path) in stderr
+        assert 'some_file' not in stderr
+
+
+def test_prepare_commit_msg_integration_failing(
+        failing_prepare_commit_msg_repo, tempdir_factory, store,
+):
+    install(C.CONFIG_FILE, store, hook_types=['prepare-commit-msg'])
+    retc, out = _get_commit_output(tempdir_factory)
+    assert retc == 1
+    assert out == '''\
+Add "Signed off by:".....................................................Failed
+- hook id: add-signoff
+- exit code: 1
+'''
+
+
+def test_prepare_commit_msg_integration_passing(
+        prepare_commit_msg_repo, tempdir_factory, store,
+):
+    install(C.CONFIG_FILE, store, hook_types=['prepare-commit-msg'])
+    retc, out = _get_commit_output(tempdir_factory, msg='Hi')
+    assert retc == 0
+    first_line = out.splitlines()[0]
+    assert first_line.startswith('Add "Signed off by:"...')
+    assert first_line.endswith('...Passed')
+    commit_msg_path = os.path.join(
+        prepare_commit_msg_repo, '.git/COMMIT_EDITMSG',
+    )
+    with open(commit_msg_path) as f:
+        assert 'Signed off by: ' in f.read()
+
+
+def test_prepare_commit_msg_legacy(
+    prepare_commit_msg_repo, tempdir_factory, store,
+):
+    hook_path = os.path.join(
+        prepare_commit_msg_repo, '.git/hooks/prepare-commit-msg',
+    )
+    os.makedirs(os.path.dirname(hook_path), exist_ok=True)
+    with open(hook_path, 'w') as hook_file:
+        hook_file.write(
+            '#!/usr/bin/env bash\n'
+            'set -eu\n'
+            'test -e "$1"\n'
+            'echo legacy\n',
+        )
+    make_executable(hook_path)
+
+    install(C.CONFIG_FILE, store, hook_types=['prepare-commit-msg'])
+
+    retc, out = _get_commit_output(tempdir_factory, msg='Hi')
+    assert retc == 0
+    first_line, second_line = out.splitlines()[:2]
+    assert first_line == 'legacy'
+    assert second_line.startswith('Add "Signed off by:"...')
+    commit_msg_path = os.path.join(
+        prepare_commit_msg_repo, '.git/COMMIT_EDITMSG',
+    )
+    with open(commit_msg_path) as f:
+        assert 'Signed off by: ' in f.read()
+
+
+def test_pre_merge_commit_integration(tempdir_factory, store):
+    expected = re.compile(
+        r'^\[INFO\] Initializing environment for .+\n'
+        r'Bash hook\.+Passed\n'
+        r"Merge made by the 'recursive' strategy.\n"
+        r' foo \| 0\n'
+        r' 1 file changed, 0 insertions\(\+\), 0 deletions\(-\)\n'
+        r' create mode 100644 foo\n$',
+    )
+
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        ret = install(C.CONFIG_FILE, store, hook_types=['pre-merge-commit'])
+        assert ret == 0
+
+        cmd_output('git', 'checkout', 'master', '-b', 'feature')
+        _get_commit_output(tempdir_factory)
+        cmd_output('git', 'checkout', 'master')
+        ret, output, _ = cmd_output_mocked_pre_commit_home(
+            'git', 'merge', '--no-ff', '--no-edit', 'feature',
+            tempdir_factory=tempdir_factory,
+        )
+        assert ret == 0
+        assert expected.match(output)
+
+
+def test_install_disallow_missing_config(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        remove_config_from_repo(path)
+        ret = install(
+            C.CONFIG_FILE, store, hook_types=['pre-commit'],
+            overwrite=True, skip_on_missing_config=False,
+        )
+        assert ret == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 1
+
+
+def test_install_allow_missing_config(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        remove_config_from_repo(path)
+        ret = install(
+            C.CONFIG_FILE, store, hook_types=['pre-commit'],
+            overwrite=True, skip_on_missing_config=True,
+        )
+        assert ret == 0
+
+        ret, output = _get_commit_output(tempdir_factory)
+        assert ret == 0
+        expected = (
+            '`.pre-commit-config.yaml` config file not found. '
+            'Skipping `pre-commit`.'
+        )
+        assert expected in output
+
+
+def test_install_temporarily_allow_mising_config(tempdir_factory, store):
+    path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(path):
+        remove_config_from_repo(path)
+        ret = install(
+            C.CONFIG_FILE, store, hook_types=['pre-commit'],
+            overwrite=True, skip_on_missing_config=False,
+        )
+        assert ret == 0
+
+        env = dict(os.environ, PRE_COMMIT_ALLOW_NO_CONFIG='1')
+        ret, output = _get_commit_output(tempdir_factory, env=env)
+        assert ret == 0
+        expected = (
+            '`.pre-commit-config.yaml` config file not found. '
+            'Skipping `pre-commit`.'
+        )
+        assert expected in output
diff --git a/tests/commands/migrate_config_test.py b/tests/commands/migrate_config_test.py
new file mode 100644
index 0000000..efc0d1c
--- /dev/null
+++ b/tests/commands/migrate_config_test.py
@@ -0,0 +1,156 @@
+import pytest
+
+import pre_commit.constants as C
+from pre_commit.commands.migrate_config import _indent
+from pre_commit.commands.migrate_config import migrate_config
+
+
+@pytest.mark.parametrize(
+    ('s', 'expected'),
+    (
+        ('', ''),
+        ('a', '    a'),
+        ('foo\nbar', '    foo\n    bar'),
+        ('foo\n\nbar\n', '    foo\n\n    bar\n'),
+        ('\n\n\n', '\n\n\n'),
+    ),
+)
+def test_indent(s, expected):
+    assert _indent(s) == expected
+
+
+def test_migrate_config_normal_format(tmpdir, capsys):
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(
+        '-   repo: local\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        name: foo\n'
+        '        entry: ./bin/foo.sh\n'
+        '        language: script\n',
+    )
+    with tmpdir.as_cwd():
+        assert not migrate_config(C.CONFIG_FILE)
+    out, _ = capsys.readouterr()
+    assert out == 'Configuration has been migrated.\n'
+    contents = cfg.read()
+    assert contents == (
+        'repos:\n'
+        '-   repo: local\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        name: foo\n'
+        '        entry: ./bin/foo.sh\n'
+        '        language: script\n'
+    )
+
+
+def test_migrate_config_document_marker(tmpdir):
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(
+        '# comment\n'
+        '\n'
+        '---\n'
+        '-   repo: local\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        name: foo\n'
+        '        entry: ./bin/foo.sh\n'
+        '        language: script\n',
+    )
+    with tmpdir.as_cwd():
+        assert not migrate_config(C.CONFIG_FILE)
+    contents = cfg.read()
+    assert contents == (
+        '# comment\n'
+        '\n'
+        '---\n'
+        'repos:\n'
+        '-   repo: local\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        name: foo\n'
+        '        entry: ./bin/foo.sh\n'
+        '        language: script\n'
+    )
+
+
+def test_migrate_config_list_literal(tmpdir):
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(
+        '[{\n'
+        '    repo: local,\n'
+        '    hooks: [{\n'
+        '        id: foo, name: foo, entry: ./bin/foo.sh,\n'
+        '        language: script,\n'
+        '    }]\n'
+        '}]',
+    )
+    with tmpdir.as_cwd():
+        assert not migrate_config(C.CONFIG_FILE)
+    contents = cfg.read()
+    assert contents == (
+        'repos:\n'
+        '    [{\n'
+        '        repo: local,\n'
+        '        hooks: [{\n'
+        '            id: foo, name: foo, entry: ./bin/foo.sh,\n'
+        '            language: script,\n'
+        '        }]\n'
+        '    }]'
+    )
+
+
+def test_already_migrated_configuration_noop(tmpdir, capsys):
+    contents = (
+        'repos:\n'
+        '-   repo: local\n'
+        '    hooks:\n'
+        '    -   id: foo\n'
+        '        name: foo\n'
+        '        entry: ./bin/foo.sh\n'
+        '        language: script\n'
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(contents)
+    with tmpdir.as_cwd():
+        assert not migrate_config(C.CONFIG_FILE)
+    out, _ = capsys.readouterr()
+    assert out == 'Configuration is already migrated.\n'
+    assert cfg.read() == contents
+
+
+def test_migrate_config_sha_to_rev(tmpdir):
+    contents = (
+        'repos:\n'
+        '-   repo: https://github.com/pre-commit/pre-commit-hooks\n'
+        '    sha: v1.2.0\n'
+        '    hooks: []\n'
+        '-   repo: https://github.com/pre-commit/pre-commit-hooks\n'
+        '    sha: v1.2.0\n'
+        '    hooks: []\n'
+    )
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(contents)
+    with tmpdir.as_cwd():
+        assert not migrate_config(C.CONFIG_FILE)
+    contents = cfg.read()
+    assert contents == (
+        'repos:\n'
+        '-   repo: https://github.com/pre-commit/pre-commit-hooks\n'
+        '    rev: v1.2.0\n'
+        '    hooks: []\n'
+        '-   repo: https://github.com/pre-commit/pre-commit-hooks\n'
+        '    rev: v1.2.0\n'
+        '    hooks: []\n'
+    )
+
+
+@pytest.mark.parametrize('contents', ('', '\n'))
+def test_empty_configuration_file_user_error(tmpdir, contents):
+    cfg = tmpdir.join(C.CONFIG_FILE)
+    cfg.write(contents)
+    with tmpdir.as_cwd():
+        assert not migrate_config(C.CONFIG_FILE)
+    # even though the config is invalid, this should be a noop
+    assert cfg.read() == contents
diff --git a/tests/commands/run_test.py b/tests/commands/run_test.py
new file mode 100644
index 0000000..f8e8823
--- /dev/null
+++ b/tests/commands/run_test.py
@@ -0,0 +1,1012 @@
+import os.path
+import shlex
+import sys
+import time
+from unittest import mock
+
+import pytest
+
+import pre_commit.constants as C
+from pre_commit import color
+from pre_commit.commands.install_uninstall import install
+from pre_commit.commands.run import _compute_cols
+from pre_commit.commands.run import _full_msg
+from pre_commit.commands.run import _get_skips
+from pre_commit.commands.run import _has_unmerged_paths
+from pre_commit.commands.run import _start_msg
+from pre_commit.commands.run import Classifier
+from pre_commit.commands.run import filter_by_include_exclude
+from pre_commit.commands.run import run
+from pre_commit.util import cmd_output
+from pre_commit.util import EnvironT
+from pre_commit.util import make_executable
+from testing.auto_namedtuple import auto_namedtuple
+from testing.fixtures import add_config_to_repo
+from testing.fixtures import git_dir
+from testing.fixtures import make_consuming_repo
+from testing.fixtures import modify_config
+from testing.fixtures import read_config
+from testing.fixtures import sample_meta_config
+from testing.fixtures import write_config
+from testing.util import cmd_output_mocked_pre_commit_home
+from testing.util import cwd
+from testing.util import git_commit
+from testing.util import run_opts
+
+
+def test_start_msg():
+    ret = _start_msg(start='start', end_len=5, cols=15)
+    # 4 dots: 15 - 5 - 5 - 1
+    assert ret == 'start....'
+
+
+def test_full_msg():
+    ret = _full_msg(
+        start='start',
+        end_msg='end',
+        end_color='',
+        use_color=False,
+        cols=15,
+    )
+    # 6 dots: 15 - 5 - 3 - 1
+    assert ret == 'start......end\n'
+
+
+def test_full_msg_with_color():
+    ret = _full_msg(
+        start='start',
+        end_msg='end',
+        end_color=color.RED,
+        use_color=True,
+        cols=15,
+    )
+    # 6 dots: 15 - 5 - 3 - 1
+    assert ret == f'start......{color.RED}end{color.NORMAL}\n'
+
+
+def test_full_msg_with_postfix():
+    ret = _full_msg(
+        start='start',
+        postfix='post ',
+        end_msg='end',
+        end_color='',
+        use_color=False,
+        cols=20,
+    )
+    # 6 dots: 20 - 5 - 5 - 3 - 1
+    assert ret == 'start......post end\n'
+
+
+def test_full_msg_postfix_not_colored():
+    ret = _full_msg(
+        start='start',
+        postfix='post ',
+        end_msg='end',
+        end_color=color.RED,
+        use_color=True,
+        cols=20,
+    )
+    # 6 dots: 20 - 5 - 5 - 3 - 1
+    assert ret == f'start......post {color.RED}end{color.NORMAL}\n'
+
+
+@pytest.fixture
+def repo_with_passing_hook(tempdir_factory):
+    git_path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(git_path):
+        yield git_path
+
+
+@pytest.fixture
+def repo_with_failing_hook(tempdir_factory):
+    git_path = make_consuming_repo(tempdir_factory, 'failing_hook_repo')
+    with cwd(git_path):
+        yield git_path
+
+
+@pytest.fixture
+def aliased_repo(tempdir_factory):
+    git_path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(git_path):
+        with modify_config() as config:
+            config['repos'][0]['hooks'].append(
+                {'id': 'bash_hook', 'alias': 'foo_bash'},
+            )
+        stage_a_file()
+        yield git_path
+
+
+def stage_a_file(filename='foo.py'):
+    open(filename, 'a').close()
+    cmd_output('git', 'add', filename)
+
+
+def _do_run(cap_out, store, repo, args, environ={}, config_file=C.CONFIG_FILE):
+    with cwd(repo):  # replicates `main._adjust_args_and_chdir` behaviour
+        ret = run(config_file, store, args, environ=environ)
+    printed = cap_out.get_bytes()
+    return ret, printed
+
+
+def _test_run(
+    cap_out, store, repo, opts, expected_outputs, expected_ret, stage,
+    config_file=C.CONFIG_FILE,
+):
+    if stage:
+        stage_a_file()
+    args = run_opts(**opts)
+    ret, printed = _do_run(cap_out, store, repo, args, config_file=config_file)
+
+    assert ret == expected_ret, (ret, expected_ret, printed)
+    for expected_output_part in expected_outputs:
+        assert expected_output_part in printed
+
+
+def test_run_all_hooks_failing(cap_out, store, repo_with_failing_hook):
+    _test_run(
+        cap_out,
+        store,
+        repo_with_failing_hook,
+        {},
+        (
+            b'Failing hook',
+            b'Failed',
+            b'hook id: failing_hook',
+            b'Fail\nfoo.py\n',
+        ),
+        expected_ret=1,
+        stage=True,
+    )
+
+
+def test_arbitrary_bytes_hook(cap_out, store, tempdir_factory):
+    git_path = make_consuming_repo(tempdir_factory, 'arbitrary_bytes_repo')
+    with cwd(git_path):
+        _test_run(
+            cap_out, store, git_path, {}, (b'\xe2\x98\x83\xb2\n',), 1, True,
+        )
+
+
+def test_hook_that_modifies_but_returns_zero(cap_out, store, tempdir_factory):
+    git_path = make_consuming_repo(
+        tempdir_factory, 'modified_file_returns_zero_repo',
+    )
+    with cwd(git_path):
+        stage_a_file('bar.py')
+        _test_run(
+            cap_out,
+            store,
+            git_path,
+            {},
+            (
+                # The first should fail
+                b'Failed',
+                # With a modified file (default message + the hook's output)
+                b'- files were modified by this hook\n\n'
+                b'Modified: foo.py',
+                # The next hook should pass despite the first modifying
+                b'Passed',
+                # The next hook should fail
+                b'Failed',
+                # bar.py was modified, but provides no additional output
+                b'- files were modified by this hook\n',
+            ),
+            1,
+            True,
+        )
+
+
+def test_types_hook_repository(cap_out, store, tempdir_factory):
+    git_path = make_consuming_repo(tempdir_factory, 'types_repo')
+    with cwd(git_path):
+        stage_a_file('bar.py')
+        stage_a_file('bar.notpy')
+        ret, printed = _do_run(cap_out, store, git_path, run_opts())
+        assert ret == 1
+        assert b'bar.py' in printed
+        assert b'bar.notpy' not in printed
+
+
+def test_exclude_types_hook_repository(cap_out, store, tempdir_factory):
+    git_path = make_consuming_repo(tempdir_factory, 'exclude_types_repo')
+    with cwd(git_path):
+        with open('exe', 'w') as exe:
+            exe.write('#!/usr/bin/env python3\n')
+        make_executable('exe')
+        cmd_output('git', 'add', 'exe')
+        stage_a_file('bar.py')
+        ret, printed = _do_run(cap_out, store, git_path, run_opts())
+        assert ret == 1
+        assert b'bar.py' in printed
+        assert b'exe' not in printed
+
+
+def test_global_exclude(cap_out, store, in_git_dir):
+    config = {
+        'exclude': r'^foo\.py$',
+        'repos': [{'repo': 'meta', 'hooks': [{'id': 'identity'}]}],
+    }
+    write_config('.', config)
+    open('foo.py', 'a').close()
+    open('bar.py', 'a').close()
+    cmd_output('git', 'add', '.')
+    opts = run_opts(verbose=True)
+    ret, printed = _do_run(cap_out, store, str(in_git_dir), opts)
+    assert ret == 0
+    # Does not contain foo.py since it was excluded
+    assert printed.startswith(f'identity{"." * 65}Passed\n'.encode())
+    assert printed.endswith(b'\n\n.pre-commit-config.yaml\nbar.py\n\n')
+
+
+def test_global_files(cap_out, store, in_git_dir):
+    config = {
+        'files': r'^bar\.py$',
+        'repos': [{'repo': 'meta', 'hooks': [{'id': 'identity'}]}],
+    }
+    write_config('.', config)
+    open('foo.py', 'a').close()
+    open('bar.py', 'a').close()
+    cmd_output('git', 'add', '.')
+    opts = run_opts(verbose=True)
+    ret, printed = _do_run(cap_out, store, str(in_git_dir), opts)
+    assert ret == 0
+    # Does not contain foo.py since it was excluded
+    assert printed.startswith(f'identity{"." * 65}Passed\n'.encode())
+    assert printed.endswith(b'\n\nbar.py\n\n')
+
+
+@pytest.mark.parametrize(
+    ('t1', 't2', 'expected'),
+    (
+        (1.234, 2., b'\n- duration: 0.77s\n'),
+        (1., 1., b'\n- duration: 0s\n'),
+    ),
+)
+def test_verbose_duration(cap_out, store, in_git_dir, t1, t2, expected):
+    write_config('.', {'repo': 'meta', 'hooks': [{'id': 'identity'}]})
+    cmd_output('git', 'add', '.')
+    opts = run_opts(verbose=True)
+    with mock.patch.object(time, 'time', side_effect=(t1, t2)):
+        ret, printed = _do_run(cap_out, store, str(in_git_dir), opts)
+    assert ret == 0
+    assert expected in printed
+
+
+@pytest.mark.parametrize(
+    ('args', 'expected_out'),
+    [
+        (
+            {
+                'show_diff_on_failure': True,
+            },
+            b'All changes made by hooks:',
+        ),
+        (
+            {
+                'show_diff_on_failure': True,
+                'color': True,
+            },
+            b'All changes made by hooks:',
+        ),
+        (
+            {
+                'show_diff_on_failure': True,
+                'all_files': True,
+            },
+            b'reproduce locally with: pre-commit run --all-files',
+        ),
+    ],
+)
+def test_show_diff_on_failure(
+        args,
+        expected_out,
+        capfd,
+        cap_out,
+        store,
+        tempdir_factory,
+):
+    git_path = make_consuming_repo(
+        tempdir_factory, 'modified_file_returns_zero_repo',
+    )
+    with cwd(git_path):
+        stage_a_file('bar.py')
+        _test_run(
+            cap_out, store, git_path, args,
+            # we're only testing the output after running
+            expected_out, 1, True,
+        )
+    out, _ = capfd.readouterr()
+    assert 'diff --git' in out
+
+
+@pytest.mark.parametrize(
+    ('options', 'outputs', 'expected_ret', 'stage'),
+    (
+        ({}, (b'Bash hook', b'Passed'), 0, True),
+        ({'verbose': True}, (b'foo.py\nHello World',), 0, True),
+        ({'hook': 'bash_hook'}, (b'Bash hook', b'Passed'), 0, True),
+        (
+            {'hook': 'nope'},
+            (b'No hook with id `nope` in stage `commit`',),
+            1,
+            True,
+        ),
+        (
+            {'hook': 'nope', 'hook_stage': 'push'},
+            (b'No hook with id `nope` in stage `push`',),
+            1,
+            True,
+        ),
+        (
+            {'all_files': True, 'verbose': True},
+            (b'foo.py',),
+            0,
+            True,
+        ),
+        (
+            {'files': ('foo.py',), 'verbose': True},
+            (b'foo.py',),
+            0,
+            True,
+        ),
+        ({}, (b'Bash hook', b'(no files to check)', b'Skipped'), 0, False),
+    ),
+)
+def test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        options,
+        outputs,
+        expected_ret,
+        stage,
+):
+    _test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        options,
+        outputs,
+        expected_ret,
+        stage,
+    )
+
+
+def test_run_output_logfile(cap_out, store, tempdir_factory):
+    expected_output = (
+        b'This is STDOUT output\n',
+        b'This is STDERR output\n',
+    )
+
+    git_path = make_consuming_repo(tempdir_factory, 'logfile_repo')
+    with cwd(git_path):
+        _test_run(
+            cap_out,
+            store,
+            git_path, {},
+            expected_output,
+            expected_ret=1,
+            stage=True,
+        )
+    logfile_path = os.path.join(git_path, 'test.log')
+    assert os.path.exists(logfile_path)
+    with open(logfile_path, 'rb') as logfile:
+        logfile_content = logfile.readlines()
+
+    for expected_output_part in expected_output:
+        assert expected_output_part in logfile_content
+
+
+def test_always_run(cap_out, store, repo_with_passing_hook):
+    with modify_config() as config:
+        config['repos'][0]['hooks'][0]['always_run'] = True
+    _test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        {},
+        (b'Bash hook', b'Passed'),
+        0,
+        stage=False,
+    )
+
+
+def test_always_run_alt_config(cap_out, store, repo_with_passing_hook):
+    repo_root = '.'
+    config = read_config(repo_root)
+    config['repos'][0]['hooks'][0]['always_run'] = True
+    alt_config_file = 'alternate_config.yaml'
+    add_config_to_repo(repo_root, config, config_file=alt_config_file)
+
+    _test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        {},
+        (b'Bash hook', b'Passed'),
+        0,
+        stage=False,
+        config_file=alt_config_file,
+    )
+
+
+def test_hook_verbose_enabled(cap_out, store, repo_with_passing_hook):
+    with modify_config() as config:
+        config['repos'][0]['hooks'][0]['always_run'] = True
+        config['repos'][0]['hooks'][0]['verbose'] = True
+
+    _test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        {},
+        (b'Hello World',),
+        0,
+        stage=False,
+    )
+
+
+@pytest.mark.parametrize(
+    ('from_ref', 'to_ref'), (('master', ''), ('', 'master')),
+)
+def test_from_ref_to_ref_error_msg_error(
+        cap_out, store, repo_with_passing_hook, from_ref, to_ref,
+):
+    args = run_opts(from_ref=from_ref, to_ref=to_ref)
+    ret, printed = _do_run(cap_out, store, repo_with_passing_hook, args)
+    assert ret == 1
+    assert b'Specify both --from-ref and --to-ref.' in printed
+
+
+def test_all_push_options_ok(cap_out, store, repo_with_passing_hook):
+    args = run_opts(
+        from_ref='master', to_ref='master',
+        remote_name='origin', remote_url='https://example.com/repo',
+    )
+    ret, printed = _do_run(cap_out, store, repo_with_passing_hook, args)
+    assert ret == 0
+    assert b'Specify both --from-ref and --to-ref.' not in printed
+
+
+def test_checkout_type(cap_out, store, repo_with_passing_hook):
+    args = run_opts(from_ref='', to_ref='', checkout_type='1')
+    environ: EnvironT = {}
+    ret, printed = _do_run(
+        cap_out, store, repo_with_passing_hook, args, environ,
+    )
+    assert environ['PRE_COMMIT_CHECKOUT_TYPE'] == '1'
+
+
+def test_has_unmerged_paths(in_merge_conflict):
+    assert _has_unmerged_paths() is True
+    cmd_output('git', 'add', '.')
+    assert _has_unmerged_paths() is False
+
+
+def test_merge_conflict(cap_out, store, in_merge_conflict):
+    ret, printed = _do_run(cap_out, store, in_merge_conflict, run_opts())
+    assert ret == 1
+    assert b'Unmerged files.  Resolve before committing.' in printed
+
+
+def test_merge_conflict_modified(cap_out, store, in_merge_conflict):
+    # Touch another file so we have unstaged non-conflicting things
+    assert os.path.exists('dummy')
+    with open('dummy', 'w') as dummy_file:
+        dummy_file.write('bar\nbaz\n')
+
+    ret, printed = _do_run(cap_out, store, in_merge_conflict, run_opts())
+    assert ret == 1
+    assert b'Unmerged files.  Resolve before committing.' in printed
+
+
+def test_merge_conflict_resolved(cap_out, store, in_merge_conflict):
+    cmd_output('git', 'add', '.')
+    ret, printed = _do_run(cap_out, store, in_merge_conflict, run_opts())
+    for msg in (
+            b'Checking merge-conflict files only.', b'Bash hook', b'Passed',
+    ):
+        assert msg in printed
+
+
+@pytest.mark.parametrize(
+    ('hooks', 'expected'),
+    (
+        ([], 80),
+        ([auto_namedtuple(id='a', name='a' * 51)], 81),
+        (
+            [
+                auto_namedtuple(id='a', name='a' * 51),
+                auto_namedtuple(id='b', name='b' * 52),
+            ],
+            82,
+        ),
+    ),
+)
+def test_compute_cols(hooks, expected):
+    assert _compute_cols(hooks) == expected
+
+
+@pytest.mark.parametrize(
+    ('environ', 'expected_output'),
+    (
+        ({}, set()),
+        ({'SKIP': ''}, set()),
+        ({'SKIP': ','}, set()),
+        ({'SKIP': ',foo'}, {'foo'}),
+        ({'SKIP': 'foo'}, {'foo'}),
+        ({'SKIP': 'foo,bar'}, {'foo', 'bar'}),
+        ({'SKIP': ' foo , bar'}, {'foo', 'bar'}),
+    ),
+)
+def test_get_skips(environ, expected_output):
+    ret = _get_skips(environ)
+    assert ret == expected_output
+
+
+def test_skip_hook(cap_out, store, repo_with_passing_hook):
+    ret, printed = _do_run(
+        cap_out, store, repo_with_passing_hook, run_opts(),
+        {'SKIP': 'bash_hook'},
+    )
+    for msg in (b'Bash hook', b'Skipped'):
+        assert msg in printed
+
+
+def test_skip_aliased_hook(cap_out, store, aliased_repo):
+    ret, printed = _do_run(
+        cap_out, store, aliased_repo,
+        run_opts(hook='foo_bash'),
+        {'SKIP': 'foo_bash'},
+    )
+    assert ret == 0
+    # Only the aliased hook runs and is skipped
+    for msg in (b'Bash hook', b'Skipped'):
+        assert printed.count(msg) == 1
+
+
+def test_hook_id_not_in_non_verbose_output(
+        cap_out, store, repo_with_passing_hook,
+):
+    ret, printed = _do_run(
+        cap_out, store, repo_with_passing_hook, run_opts(verbose=False),
+    )
+    assert b'[bash_hook]' not in printed
+
+
+def test_hook_id_in_verbose_output(cap_out, store, repo_with_passing_hook):
+    ret, printed = _do_run(
+        cap_out, store, repo_with_passing_hook, run_opts(verbose=True),
+    )
+    assert b'- hook id: bash_hook' in printed
+
+
+def test_multiple_hooks_same_id(cap_out, store, repo_with_passing_hook):
+    with cwd(repo_with_passing_hook):
+        # Add bash hook on there again
+        with modify_config() as config:
+            config['repos'][0]['hooks'].append({'id': 'bash_hook'})
+        stage_a_file()
+
+    ret, output = _do_run(cap_out, store, repo_with_passing_hook, run_opts())
+    assert ret == 0
+    assert output.count(b'Bash hook') == 2
+
+
+def test_aliased_hook_run(cap_out, store, aliased_repo):
+    ret, output = _do_run(
+        cap_out, store, aliased_repo,
+        run_opts(verbose=True, hook='bash_hook'),
+    )
+    assert ret == 0
+    # Both hooks will run since they share the same ID
+    assert output.count(b'Bash hook') == 2
+
+    ret, output = _do_run(
+        cap_out, store, aliased_repo,
+        run_opts(verbose=True, hook='foo_bash'),
+    )
+    assert ret == 0
+    # Only the aliased hook runs
+    assert output.count(b'Bash hook') == 1
+
+
+def test_non_ascii_hook_id(repo_with_passing_hook, tempdir_factory):
+    with cwd(repo_with_passing_hook):
+        _, stdout, _ = cmd_output_mocked_pre_commit_home(
+            sys.executable, '-m', 'pre_commit.main', 'run', '☃',
+            retcode=None, tempdir_factory=tempdir_factory,
+        )
+        assert 'UnicodeDecodeError' not in stdout
+        # Doesn't actually happen, but a reasonable assertion
+        assert 'UnicodeEncodeError' not in stdout
+
+
+def test_stdout_write_bug_py26(repo_with_failing_hook, store, tempdir_factory):
+    with cwd(repo_with_failing_hook):
+        with modify_config() as config:
+            config['repos'][0]['hooks'][0]['args'] = ['☃']
+        stage_a_file()
+
+        install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+
+        # Have to use subprocess because pytest monkeypatches sys.stdout
+        _, out = git_commit(
+            fn=cmd_output_mocked_pre_commit_home,
+            tempdir_factory=tempdir_factory,
+            retcode=None,
+        )
+        assert 'UnicodeEncodeError' not in out
+        # Doesn't actually happen, but a reasonable assertion
+        assert 'UnicodeDecodeError' not in out
+
+
+def test_lots_of_files(store, tempdir_factory):
+    # windows xargs seems to have a bug, here's a regression test for
+    # our workaround
+    git_path = make_consuming_repo(tempdir_factory, 'script_hooks_repo')
+    with cwd(git_path):
+        # Override files so we run against them
+        with modify_config() as config:
+            config['repos'][0]['hooks'][0]['files'] = ''
+
+        # Write a crap ton of files
+        for i in range(400):
+            open(f'{"a" * 100}{i}', 'w').close()
+
+        cmd_output('git', 'add', '.')
+        install(C.CONFIG_FILE, store, hook_types=['pre-commit'])
+
+        git_commit(
+            fn=cmd_output_mocked_pre_commit_home,
+            tempdir_factory=tempdir_factory,
+        )
+
+
+def test_stages(cap_out, store, repo_with_passing_hook):
+    config = {
+        'repo': 'local',
+        'hooks': [
+            {
+                'id': f'do-not-commit-{i}',
+                'name': f'hook {i}',
+                'entry': 'DO NOT COMMIT',
+                'language': 'pygrep',
+                'stages': [stage],
+            }
+            for i, stage in enumerate(('commit', 'push', 'manual'), 1)
+        ],
+    }
+    add_config_to_repo(repo_with_passing_hook, config)
+
+    stage_a_file()
+
+    def _run_for_stage(stage):
+        args = run_opts(hook_stage=stage)
+        ret, printed = _do_run(cap_out, store, repo_with_passing_hook, args)
+        assert not ret, (ret, printed)
+        # this test should only run one hook
+        assert printed.count(b'hook ') == 1
+        return printed
+
+    assert _run_for_stage('commit').startswith(b'hook 1...')
+    assert _run_for_stage('push').startswith(b'hook 2...')
+    assert _run_for_stage('manual').startswith(b'hook 3...')
+
+
+def test_commit_msg_hook(cap_out, store, commit_msg_repo):
+    filename = '.git/COMMIT_EDITMSG'
+    with open(filename, 'w') as f:
+        f.write('This is the commit message')
+
+    _test_run(
+        cap_out,
+        store,
+        commit_msg_repo,
+        {'hook_stage': 'commit-msg', 'commit_msg_filename': filename},
+        expected_outputs=[b'Must have "Signed off by:"', b'Failed'],
+        expected_ret=1,
+        stage=False,
+    )
+
+
+def test_post_checkout_hook(cap_out, store, tempdir_factory):
+    path = git_dir(tempdir_factory)
+    config = {
+        'repo': 'meta', 'hooks': [
+            {'id': 'identity', 'stages': ['post-checkout']},
+        ],
+    }
+    add_config_to_repo(path, config)
+
+    with cwd(path):
+        _test_run(
+            cap_out,
+            store,
+            path,
+            {'hook_stage': 'post-checkout'},
+            expected_outputs=[b'identity...'],
+            expected_ret=0,
+            stage=False,
+        )
+
+
+def test_prepare_commit_msg_hook(cap_out, store, prepare_commit_msg_repo):
+    filename = '.git/COMMIT_EDITMSG'
+    with open(filename, 'w') as f:
+        f.write('This is the commit message')
+
+    _test_run(
+        cap_out,
+        store,
+        prepare_commit_msg_repo,
+        {'hook_stage': 'prepare-commit-msg', 'commit_msg_filename': filename},
+        expected_outputs=[b'Add "Signed off by:"', b'Passed'],
+        expected_ret=0,
+        stage=False,
+    )
+
+    with open(filename) as f:
+        assert 'Signed off by: ' in f.read()
+
+
+def test_local_hook_passes(cap_out, store, repo_with_passing_hook):
+    config = {
+        'repo': 'local',
+        'hooks': [
+            {
+                'id': 'identity-copy',
+                'name': 'identity-copy',
+                'entry': '{} -m pre_commit.meta_hooks.identity'.format(
+                    shlex.quote(sys.executable),
+                ),
+                'language': 'system',
+                'files': r'\.py$',
+            },
+            {
+                'id': 'do_not_commit',
+                'name': 'Block if "DO NOT COMMIT" is found',
+                'entry': 'DO NOT COMMIT',
+                'language': 'pygrep',
+            },
+        ],
+    }
+    add_config_to_repo(repo_with_passing_hook, config)
+
+    with open('dummy.py', 'w') as staged_file:
+        staged_file.write('"""TODO: something"""\n')
+    cmd_output('git', 'add', 'dummy.py')
+
+    _test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        opts={},
+        expected_outputs=[b''],
+        expected_ret=0,
+        stage=False,
+    )
+
+
+def test_local_hook_fails(cap_out, store, repo_with_passing_hook):
+    config = {
+        'repo': 'local',
+        'hooks': [{
+            'id': 'no-todo',
+            'name': 'No TODO',
+            'entry': 'sh -c "! grep -iI todo $@" --',
+            'language': 'system',
+        }],
+    }
+    add_config_to_repo(repo_with_passing_hook, config)
+
+    with open('dummy.py', 'w') as staged_file:
+        staged_file.write('"""TODO: something"""\n')
+    cmd_output('git', 'add', 'dummy.py')
+
+    _test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        opts={},
+        expected_outputs=[b''],
+        expected_ret=1,
+        stage=False,
+    )
+
+
+def test_meta_hook_passes(cap_out, store, repo_with_passing_hook):
+    add_config_to_repo(repo_with_passing_hook, sample_meta_config())
+
+    _test_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        opts={},
+        expected_outputs=[b'Check for useless excludes'],
+        expected_ret=0,
+        stage=False,
+    )
+
+
+@pytest.fixture
+def modified_config_repo(repo_with_passing_hook):
+    with modify_config(repo_with_passing_hook, commit=False) as config:
+        # Some minor modification
+        config['repos'][0]['hooks'][0]['files'] = ''
+    yield repo_with_passing_hook
+
+
+def test_error_with_unstaged_config(cap_out, store, modified_config_repo):
+    args = run_opts()
+    ret, printed = _do_run(cap_out, store, modified_config_repo, args)
+    assert b'Your pre-commit configuration is unstaged.' in printed
+    assert ret == 1
+
+
+def test_commit_msg_missing_filename(cap_out, store, repo_with_passing_hook):
+    args = run_opts(hook_stage='commit-msg')
+    ret, printed = _do_run(cap_out, store, repo_with_passing_hook, args)
+    assert ret == 1
+    assert printed == (
+        b'[ERROR] `--commit-msg-filename` is required for '
+        b'`--hook-stage commit-msg`\n'
+    )
+
+
+@pytest.mark.parametrize(
+    'opts', (run_opts(all_files=True), run_opts(files=[C.CONFIG_FILE])),
+)
+def test_no_unstaged_error_with_all_files_or_files(
+        cap_out, store, modified_config_repo, opts,
+):
+    ret, printed = _do_run(cap_out, store, modified_config_repo, opts)
+    assert b'Your pre-commit configuration is unstaged.' not in printed
+
+
+def test_files_running_subdir(repo_with_passing_hook, tempdir_factory):
+    with cwd(repo_with_passing_hook):
+        os.mkdir('subdir')
+        open('subdir/foo.py', 'w').close()
+        cmd_output('git', 'add', 'subdir/foo.py')
+
+        with cwd('subdir'):
+            # Use subprocess to demonstrate behaviour in main
+            _, stdout, _ = cmd_output_mocked_pre_commit_home(
+                sys.executable, '-m', 'pre_commit.main', 'run', '-v',
+                # Files relative to where we are (#339)
+                '--files', 'foo.py',
+                tempdir_factory=tempdir_factory,
+            )
+        assert 'subdir/foo.py' in stdout
+
+
+@pytest.mark.parametrize(
+    ('pass_filenames', 'hook_args', 'expected_out'),
+    (
+        (True, [], b'foo.py'),
+        (False, [], b''),
+        (True, ['some', 'args'], b'some args foo.py'),
+        (False, ['some', 'args'], b'some args'),
+    ),
+)
+def test_pass_filenames(
+        cap_out, store, repo_with_passing_hook,
+        pass_filenames, hook_args, expected_out,
+):
+    with modify_config() as config:
+        config['repos'][0]['hooks'][0]['pass_filenames'] = pass_filenames
+        config['repos'][0]['hooks'][0]['args'] = hook_args
+    stage_a_file()
+    ret, printed = _do_run(
+        cap_out, store, repo_with_passing_hook, run_opts(verbose=True),
+    )
+    assert expected_out + b'\nHello World' in printed
+    assert (b'foo.py' in printed) == pass_filenames
+
+
+def test_fail_fast(cap_out, store, repo_with_failing_hook):
+    with modify_config() as config:
+        # More than one hook
+        config['fail_fast'] = True
+        config['repos'][0]['hooks'] *= 2
+    stage_a_file()
+
+    ret, printed = _do_run(cap_out, store, repo_with_failing_hook, run_opts())
+    # it should have only run one hook
+    assert printed.count(b'Failing hook') == 1
+
+
+def test_classifier_removes_dne():
+    classifier = Classifier(('this_file_does_not_exist',))
+    assert classifier.filenames == []
+
+
+def test_classifier_normalizes_filenames_on_windows_to_forward_slashes(tmpdir):
+    with tmpdir.as_cwd():
+        tmpdir.join('a/b/c').ensure()
+        with mock.patch.object(os, 'altsep', '/'):
+            with mock.patch.object(os, 'sep', '\\'):
+                classifier = Classifier((r'a\b\c',))
+                assert classifier.filenames == ['a/b/c']
+
+
+def test_classifier_does_not_normalize_backslashes_non_windows(tmpdir):
+    with mock.patch.object(os.path, 'lexists', return_value=True):
+        with mock.patch.object(os, 'altsep', None):
+            with mock.patch.object(os, 'sep', '/'):
+                classifier = Classifier((r'a/b\c',))
+                assert classifier.filenames == [r'a/b\c']
+
+
+@pytest.fixture
+def some_filenames():
+    return (
+        '.pre-commit-hooks.yaml',
+        'pre_commit/git.py',
+        'pre_commit/main.py',
+    )
+
+
+def test_include_exclude_base_case(some_filenames):
+    ret = filter_by_include_exclude(some_filenames, '', '^$')
+    assert ret == [
+        '.pre-commit-hooks.yaml',
+        'pre_commit/git.py',
+        'pre_commit/main.py',
+    ]
+
+
+def test_matches_broken_symlink(tmpdir):
+    with tmpdir.as_cwd():
+        os.symlink('does-not-exist', 'link')
+        ret = filter_by_include_exclude({'link'}, '', '^$')
+        assert ret == ['link']
+
+
+def test_include_exclude_total_match(some_filenames):
+    ret = filter_by_include_exclude(some_filenames, r'^.*\.py$', '^$')
+    assert ret == ['pre_commit/git.py', 'pre_commit/main.py']
+
+
+def test_include_exclude_does_search_instead_of_match(some_filenames):
+    ret = filter_by_include_exclude(some_filenames, r'\.yaml$', '^$')
+    assert ret == ['.pre-commit-hooks.yaml']
+
+
+def test_include_exclude_exclude_removes_files(some_filenames):
+    ret = filter_by_include_exclude(some_filenames, '', r'\.py$')
+    assert ret == ['.pre-commit-hooks.yaml']
+
+
+def test_args_hook_only(cap_out, store, repo_with_passing_hook):
+    config = {
+        'repo': 'local',
+        'hooks': [
+            {
+                'id': 'identity-copy',
+                'name': 'identity-copy',
+                'entry': '{} -m pre_commit.meta_hooks.identity'.format(
+                    shlex.quote(sys.executable),
+                ),
+                'language': 'system',
+                'files': r'\.py$',
+                'stages': ['commit'],
+            },
+            {
+                'id': 'do_not_commit',
+                'name': 'Block if "DO NOT COMMIT" is found',
+                'entry': 'DO NOT COMMIT',
+                'language': 'pygrep',
+            },
+        ],
+    }
+    add_config_to_repo(repo_with_passing_hook, config)
+    stage_a_file()
+    ret, printed = _do_run(
+        cap_out,
+        store,
+        repo_with_passing_hook,
+        run_opts(hook='do_not_commit'),
+    )
+    assert b'identity-copy' not in printed
diff --git a/tests/commands/sample_config_test.py b/tests/commands/sample_config_test.py
new file mode 100644
index 0000000..11c0876
--- /dev/null
+++ b/tests/commands/sample_config_test.py
@@ -0,0 +1,19 @@
+from pre_commit.commands.sample_config import sample_config
+
+
+def test_sample_config(capsys):
+    ret = sample_config()
+    assert ret == 0
+    out, _ = capsys.readouterr()
+    assert out == '''\
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v2.4.0
+    hooks:
+    -   id: trailing-whitespace
+    -   id: end-of-file-fixer
+    -   id: check-yaml
+    -   id: check-added-large-files
+'''
diff --git a/tests/commands/try_repo_test.py b/tests/commands/try_repo_test.py
new file mode 100644
index 0000000..d3ec3fd
--- /dev/null
+++ b/tests/commands/try_repo_test.py
@@ -0,0 +1,151 @@
+import os.path
+import re
+import time
+from unittest import mock
+
+from pre_commit import git
+from pre_commit.commands.try_repo import try_repo
+from pre_commit.util import cmd_output
+from testing.auto_namedtuple import auto_namedtuple
+from testing.fixtures import git_dir
+from testing.fixtures import make_repo
+from testing.fixtures import modify_manifest
+from testing.util import cwd
+from testing.util import git_commit
+from testing.util import run_opts
+
+
+def try_repo_opts(repo, ref=None, **kwargs):
+    return auto_namedtuple(repo=repo, ref=ref, **run_opts(**kwargs)._asdict())
+
+
+def _get_out(cap_out):
+    out = re.sub(r'\[INFO\].+\n', '', cap_out.get())
+    start, using_config, config, rest = out.split(f'{"=" * 79}\n')
+    assert using_config == 'Using config:\n'
+    return start, config, rest
+
+
+def _add_test_file():
+    open('test-file', 'a').close()
+    cmd_output('git', 'add', '.')
+
+
+def _run_try_repo(tempdir_factory, **kwargs):
+    repo = make_repo(tempdir_factory, 'modified_file_returns_zero_repo')
+    with cwd(git_dir(tempdir_factory)):
+        _add_test_file()
+        assert not try_repo(try_repo_opts(repo, **kwargs))
+
+
+def test_try_repo_repo_only(cap_out, tempdir_factory):
+    with mock.patch.object(time, 'time', return_value=0.0):
+        _run_try_repo(tempdir_factory, verbose=True)
+    start, config, rest = _get_out(cap_out)
+    assert start == ''
+    assert re.match(
+        '^repos:\n'
+        '-   repo: .+\n'
+        '    rev: .+\n'
+        '    hooks:\n'
+        '    -   id: bash_hook\n'
+        '    -   id: bash_hook2\n'
+        '    -   id: bash_hook3\n$',
+        config,
+    )
+    assert rest == '''\
+Bash hook............................................(no files to check)Skipped
+- hook id: bash_hook
+Bash hook................................................................Passed
+- hook id: bash_hook2
+- duration: 0s
+
+test-file
+
+Bash hook............................................(no files to check)Skipped
+- hook id: bash_hook3
+'''
+
+
+def test_try_repo_with_specific_hook(cap_out, tempdir_factory):
+    _run_try_repo(tempdir_factory, hook='bash_hook', verbose=True)
+    start, config, rest = _get_out(cap_out)
+    assert start == ''
+    assert re.match(
+        '^repos:\n'
+        '-   repo: .+\n'
+        '    rev: .+\n'
+        '    hooks:\n'
+        '    -   id: bash_hook\n$',
+        config,
+    )
+    assert rest == '''\
+Bash hook............................................(no files to check)Skipped
+- hook id: bash_hook
+'''
+
+
+def test_try_repo_relative_path(cap_out, tempdir_factory):
+    repo = make_repo(tempdir_factory, 'modified_file_returns_zero_repo')
+    with cwd(git_dir(tempdir_factory)):
+        _add_test_file()
+        relative_repo = os.path.relpath(repo, '.')
+        # previously crashed on cloning a relative path
+        assert not try_repo(try_repo_opts(relative_repo, hook='bash_hook'))
+
+
+def test_try_repo_bare_repo(cap_out, tempdir_factory):
+    repo = make_repo(tempdir_factory, 'modified_file_returns_zero_repo')
+    with cwd(git_dir(tempdir_factory)):
+        _add_test_file()
+        bare_repo = os.path.join(repo, '.git')
+        # previously crashed attempting modification changes
+        assert not try_repo(try_repo_opts(bare_repo, hook='bash_hook'))
+
+
+def test_try_repo_specific_revision(cap_out, tempdir_factory):
+    repo = make_repo(tempdir_factory, 'script_hooks_repo')
+    ref = git.head_rev(repo)
+    git_commit(cwd=repo)
+    with cwd(git_dir(tempdir_factory)):
+        _add_test_file()
+        assert not try_repo(try_repo_opts(repo, ref=ref))
+
+    _, config, _ = _get_out(cap_out)
+    assert ref in config
+
+
+def test_try_repo_uncommitted_changes(cap_out, tempdir_factory):
+    repo = make_repo(tempdir_factory, 'script_hooks_repo')
+    # make an uncommitted change
+    with modify_manifest(repo, commit=False) as manifest:
+        manifest[0]['name'] = 'modified name!'
+
+    with cwd(git_dir(tempdir_factory)):
+        open('test-fie', 'a').close()
+        cmd_output('git', 'add', '.')
+        assert not try_repo(try_repo_opts(repo))
+
+    start, config, rest = _get_out(cap_out)
+    assert start == '[WARNING] Creating temporary repo with uncommitted changes...\n'  # noqa: E501
+    assert re.match(
+        '^repos:\n'
+        '-   repo: .+shadow-repo\n'
+        '    rev: .+\n'
+        '    hooks:\n'
+        '    -   id: bash_hook\n$',
+        config,
+    )
+    assert rest == 'modified name!...........................................................Passed\n'  # noqa: E501
+
+
+def test_try_repo_staged_changes(tempdir_factory):
+    repo = make_repo(tempdir_factory, 'modified_file_returns_zero_repo')
+
+    with cwd(repo):
+        open('staged-file', 'a').close()
+        open('second-staged-file', 'a').close()
+        cmd_output('git', 'add', '.')
+
+    with cwd(git_dir(tempdir_factory)):
+        assert not try_repo(try_repo_opts(repo, hook='bash_hook'))