1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
|
#!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
set -ex
: ${R_BIN:=R}
source_dir=${1}/r
pushd ${source_dir}
printenv
if [ "$ARROW_USE_PKG_CONFIG" != "false" ]; then
export LD_LIBRARY_PATH=${ARROW_HOME}/lib:${LD_LIBRARY_PATH}
export R_LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
fi
export _R_CHECK_COMPILATION_FLAGS_KNOWN_=${ARROW_R_CXXFLAGS}
if [ "$ARROW_R_DEV" = "TRUE" ]; then
# These are sometimes used in the Arrow C++ build and are not a problem
export _R_CHECK_COMPILATION_FLAGS_KNOWN_="${_R_CHECK_COMPILATION_FLAGS_KNOWN_} -Wno-attributes -msse4.2 -Wno-noexcept-type -Wno-subobject-linkage"
if [ "$NOT_CRAN" = "" ]; then
# Note that NOT_CRAN=true means (among other things) that optional dependencies are built
# You can set NOT_CRAN=false for the CRAN build and then
# ARROW_R_DEV=TRUE just adds verbosity
export NOT_CRAN=true
fi
fi
export _R_CHECK_CRAN_INCOMING_REMOTE_=FALSE
if [ "$TEST_R_WITHOUT_LIBARROW" != "TRUE" ]; then
# --run-donttest was used in R < 4.0, this is used now
export _R_CHECK_DONTTEST_EXAMPLES_=TRUE
fi
# Not all Suggested packages are needed for checking, so in case they aren't installed don't fail
export _R_CHECK_FORCE_SUGGESTS_=FALSE
export _R_CHECK_LIMIT_CORES_=FALSE
export _R_CHECK_TESTS_NLINES_=0
# By default, aws-sdk tries to contact a non-existing local ip host
# to retrieve metadata. Disable this so that S3FileSystem tests run faster.
export AWS_EC2_METADATA_DISABLED=TRUE
# Hack so that texlive2020 doesn't pollute the home dir
export TEXMFCONFIG=/tmp/texmf-config
export TEXMFVAR=/tmp/texmf-var
if [[ "$DEVTOOLSET_VERSION" -gt 0 ]]; then
# enable the devtoolset version to use it
source /opt/rh/devtoolset-$DEVTOOLSET_VERSION/enable
fi
# Make sure we aren't writing to the home dir (CRAN _hates_ this but there is no official check)
BEFORE=$(ls -alh ~/)
SCRIPT="as_cran <- !identical(tolower(Sys.getenv('NOT_CRAN')), 'true')
if (as_cran) {
args <- '--as-cran'
build_args <- character()
} else {
args <- c('--no-manual', '--ignore-vignettes')
build_args <- '--no-build-vignettes'
if (nzchar(Sys.which('minio'))) {
message('Running minio for S3 tests (if build supports them)')
minio_dir <- tempfile()
dir.create(minio_dir)
pid <- sys::exec_background('minio', c('server', minio_dir))
on.exit(tools::pskill(pid))
}
}
run_donttest <- identical(tolower(Sys.getenv('_R_CHECK_DONTTEST_EXAMPLES_', 'true')), 'true')
if (run_donttest) {
args <- c(args, '--run-donttest')
}
install_args <- Sys.getenv('INSTALL_ARGS')
if (nzchar(install_args)) {
args <- c(args, paste0('--install-args=\"', install_args, '\"'))
}
rcmdcheck::rcmdcheck(build_args = build_args, args = args, error_on = 'warning', check_dir = 'check', timeout = 3600)"
echo "$SCRIPT" | ${R_BIN} --no-save
AFTER=$(ls -alh ~/)
if [ "$NOT_CRAN" != "true" ] && [ "$BEFORE" != "$AFTER" ]; then
ls -alh ~/.cmake/packages
exit 1
fi
popd
|
