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Diffstat (limited to 'share/extensions/other/clipart/sources/reactome.py')
-rw-r--r-- | share/extensions/other/clipart/sources/reactome.py | 64 |
1 files changed, 64 insertions, 0 deletions
diff --git a/share/extensions/other/clipart/sources/reactome.py b/share/extensions/other/clipart/sources/reactome.py new file mode 100644 index 0000000..20f42c8 --- /dev/null +++ b/share/extensions/other/clipart/sources/reactome.py @@ -0,0 +1,64 @@ +# +# Copyright 2021 Martin Owens <doctormo@gmail.com> +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 3 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/> +# +""" +Access Reactome Content Services. +""" + +import re + +from import_sources import RemoteSource + +TAG_REX = re.compile(r"<[^<]+?>") + + +class Reactome(RemoteSource): + name = "Reactome (Bio)" + icon = "sources/reactome.svg" + search_url = "https://reactome.org/ContentService/search/query" + file_url = "https://reactome.org/icon/{stId}.svg" + icon_url = "https://reactome.org/icon/{stId}.png" + all_licence = "cc-by-sa-4.0" + + def search(self, query): + params = { + "query": query, + "types": "Icon", + "cluster": "true", + "Start row": 0, + "rows": 100, + } + response = {} + try: + response = self.session.get(self.search_url, params=params).json() + except Exception: + pass + + if "messages" in response and "No entries" in response["messages"][0]: + return + for cats in response.get("results", []): + for entry in cats["entries"]: + yield { + "id": entry["dbId"], + "name": TAG_REX.sub("", entry["name"]), + "author": "Reactome/" + entry.get("iconDesignerName", "Unknown"), + "summary": TAG_REX.sub("", entry.get("summation", "")), + "created": None, # No data + "popularity": 0, # No data + "thumbnail": self.icon_url.format(**entry), + "file": self.file_url.format(**entry), + "license": self.all_licence, + } |