1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
|
/* Copyright (C) 2007-2013 Arjen G Lentz & Antony T Curtis for Open Query
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1335 USA */
/* ======================================================================
Open Query Graph Computation Engine, based on a concept by Arjen Lentz
v3 implementation by Antony Curtis, Arjen Lentz, Andrew McDonnell
For more information, documentation, support, enhancement engineering,
see http://openquery.com/graph or contact graph@openquery.com
======================================================================
*/
#pragma once
#include "oqgraph_judy.h"
#include "oqgraph_thunk.h"
#include <boost/graph/directed_graph.hpp>
#include <boost/graph/adjacency_iterator.hpp>
namespace open_query
{
struct OQGraphTraversalCategory
: public boost::bidirectional_graph_tag
, public boost::adjacency_graph_tag
, public boost::edge_list_graph_tag
{ };
}
namespace oqgraph3
{
struct traversal_category
: public boost::adjacency_graph_tag
, public boost::bidirectional_graph_tag
, public boost::edge_list_graph_tag
{ };
struct edge_iterator
{
typedef edge_iterator self;
typedef edge_info value_type;
typedef edge_info& reference;
typedef edge_info pointer;
typedef std::ptrdiff_t difference_type;
typedef std::input_iterator_tag iterator_category;
edge_iterator() { }
edge_iterator(const graph_ptr& graph, size_t offset=0)
: _graph(graph)
, _offset(offset) { }
value_type operator*();
self& operator+=(size_t n) { _offset+= n; return *this; }
self& operator++() { ++_offset; return *this; }
self operator++(int)
{ size_t temp= _offset++; return edge_iterator(_graph, temp); }
bool seek();
bool operator==(const self& x);
bool operator!=(const self& x);
graph_ptr _graph;
size_t _offset;
};
struct vertex_iterator
{
typedef vertex_iterator self;
typedef vertex_id value_type;
typedef vertex_id& reference;
typedef vertex_id pointer;
typedef std::ptrdiff_t difference_type;
typedef std::input_iterator_tag iterator_category;
vertex_iterator() { }
vertex_iterator(const cursor_ptr& pos) : _cursor(pos.operator->()) { }
vertex_id operator*() const
{
edge_info edge(*_cursor);
if (!_seen.test(edge.origid()))
return edge.origid();
else
return edge.destid();
}
self& operator++()
{
edge_info edge(*_cursor);
if (!_seen.test(edge.origid()))
{
_seen.set(edge.origid());
}
else
{
_seen.set(edge.destid());
}
while (_seen.test(edge.origid()) && _seen.test(edge.destid()))
{
if (_cursor->seek_next())
break;
edge= _cursor;
}
return *this;
}
self operator++(int) { cursor* t(new cursor(*_cursor)); ++(*this); return vertex_iterator(t); }
bool operator==(const self& x) { return *_cursor == *x._cursor; }
bool operator!=(const self& x) { return *_cursor != *x._cursor; }
cursor_ptr _cursor;
open_query::judy_bitset _seen;
};
struct out_edge_iterator
{
typedef out_edge_iterator self;
typedef edge_info value_type;
typedef edge_info& reference;
typedef edge_info pointer;
typedef std::ptrdiff_t difference_type;
typedef std::input_iterator_tag iterator_category;
out_edge_iterator() { }
out_edge_iterator(const cursor_ptr& cursor) : _cursor(cursor) { }
value_type operator*() { return value_type(_cursor); }
self& operator++() { _cursor->seek_next(); return *this; }
self operator++(int)
{ cursor_ptr t(new cursor(*_cursor)); ++(*this); return out_edge_iterator(t); }
bool operator==(const self& x) { return _cursor == x._cursor; }
bool operator!=(const self& x) { return _cursor != x._cursor; }
cursor_ptr _cursor;
};
struct in_edge_iterator
{
typedef in_edge_iterator self;
typedef edge_info value_type;
typedef edge_info& reference;
typedef edge_info pointer;
typedef std::ptrdiff_t difference_type;
typedef std::input_iterator_tag iterator_category;
in_edge_iterator() { }
in_edge_iterator(const cursor_ptr& cursor) : _cursor(cursor) { }
value_type operator*() const { return value_type(_cursor); }
self& operator++() { _cursor->seek_next(); return *this; }
self operator++(int)
{ cursor_ptr t(new cursor(*_cursor)); ++(*this); return in_edge_iterator(t); }
bool operator==(const self& x) const { return _cursor == x._cursor; }
bool operator!=(const self& x) const { return _cursor != x._cursor; }
cursor_ptr _cursor;
};
struct vertex_index_property_map
{
typedef vertex_id value_type;
typedef value_type reference;
typedef vertex_id key_type;
typedef boost::readable_property_map_tag category;
vertex_index_property_map(const graph& g) : _g(g) { }
const graph& _g;
friend inline reference
get(const vertex_index_property_map&, key_type key)
{ return key; }
};
struct edge_weight_property_map
{
typedef weight_t value_type;
typedef value_type reference;
typedef edge_info key_type;
typedef boost::readable_property_map_tag category;
edge_weight_property_map(const graph& g) : _g(g) { }
friend inline reference
get(const edge_weight_property_map& p, const key_type& key)
{ return key.weight(); }
const graph& _g;
};
struct edge_index_property_map
{
typedef cursor_ptr value_type;
typedef cursor_ptr reference;
typedef edge_info key_type;
typedef boost::readable_property_map_tag category;
edge_index_property_map(const graph& g) : _g(g) { }
const graph& _g;
};
}
namespace boost
{
template<>
struct graph_traits<oqgraph3::graph>
{
typedef oqgraph3::vertex_id vertex_descriptor;
typedef oqgraph3::edge_info edge_descriptor;
typedef boost::adjacency_iterator_generator<
oqgraph3::graph,
oqgraph3::vertex_id,
oqgraph3::out_edge_iterator>::type adjacency_iterator;
typedef oqgraph3::out_edge_iterator out_edge_iterator;
typedef oqgraph3::in_edge_iterator in_edge_iterator;
typedef oqgraph3::vertex_iterator vertex_iterator;
typedef oqgraph3::edge_iterator edge_iterator;
typedef boost::directed_tag directed_category;
typedef boost::allow_parallel_edge_tag edge_parallel_category;
typedef oqgraph3::traversal_category traversal_category;
typedef oqgraph3::vertices_size_type vertices_size_type;
typedef oqgraph3::edges_size_type edges_size_type;
typedef oqgraph3::degree_size_type degree_size_type;
static inline oqgraph3::vertex_id null_vertex()
{ return oqgraph3::vertex_id(-1); }
};
template<>
struct graph_traits<const oqgraph3::graph>
: public graph_traits<oqgraph3::graph>
{ };
template <>
struct graph_property_type<oqgraph3::graph>
{
typedef no_property type;
};
template <>
struct vertex_property_type<oqgraph3::graph>
{
typedef no_property type;
};
template <>
struct edge_property_type<oqgraph3::graph>
{
typedef no_property type;
};
#if BOOST_VERSION < 106000 && BOOST_VERSION >= 104601
template <>
struct graph_bundle_type<oqgraph3::graph>
{
typedef no_graph_bundle type;
};
template <>
struct vertex_bundle_type<oqgraph3::graph>
{
typedef no_vertex_bundle type;
};
template <>
struct edge_bundle_type<oqgraph3::graph>
{
typedef no_edge_bundle type;
};
#endif
template<>
struct property_map<oqgraph3::graph, edge_weight_t>
{
typedef void type;
typedef oqgraph3::edge_weight_property_map const_type;
};
template<>
struct property_map<oqgraph3::graph, vertex_index_t>
{
typedef void type;
typedef oqgraph3::vertex_index_property_map const_type;
};
template<>
struct property_map<oqgraph3::graph, edge_index_t>
{
typedef void type;
typedef oqgraph3::edge_index_property_map const_type;
};
}
namespace oqgraph3
{
using namespace boost;
inline graph_traits<oqgraph3::graph>::vertex_descriptor
source(
const graph_traits<oqgraph3::graph>::edge_descriptor& e,
const oqgraph3::graph&)
{ return e.origid(); }
inline graph_traits<oqgraph3::graph>::vertex_descriptor
target(
const graph_traits<oqgraph3::graph>::edge_descriptor& e,
const oqgraph3::graph&)
{ return e.destid(); }
inline std::pair<
graph_traits<oqgraph3::graph>::out_edge_iterator,
graph_traits<oqgraph3::graph>::out_edge_iterator>
out_edges(
graph_traits<oqgraph3::graph>::vertex_descriptor v,
const oqgraph3::graph& g)
{
oqgraph3::cursor*
end= new oqgraph3::cursor(const_cast<oqgraph3::graph*>(&g));
oqgraph3::cursor*
start= new oqgraph3::cursor(const_cast<oqgraph3::graph*>(&g));
start->seek_to(v, boost::none);
return std::make_pair(
graph_traits<oqgraph3::graph>::out_edge_iterator(start),
graph_traits<oqgraph3::graph>::out_edge_iterator(end));
}
inline graph_traits<oqgraph3::graph>::degree_size_type
out_degree(
graph_traits<oqgraph3::graph>::vertex_descriptor v,
const oqgraph3::graph& g)
{
std::size_t count = 0;
for (std::pair<
graph_traits<oqgraph3::graph>::out_edge_iterator,
graph_traits<oqgraph3::graph>::out_edge_iterator> i= out_edges(v, g);
i.first != i.second; ++i.first)
{
++count;
}
return count;
}
inline std::pair<
graph_traits<oqgraph3::graph>::in_edge_iterator,
graph_traits<oqgraph3::graph>::in_edge_iterator>
in_edges(
graph_traits<oqgraph3::graph>::vertex_descriptor v,
const oqgraph3::graph& g)
{
oqgraph3::cursor*
end= new oqgraph3::cursor(const_cast<oqgraph3::graph*>(&g));
oqgraph3::cursor*
start= new oqgraph3::cursor(const_cast<oqgraph3::graph*>(&g));
start->seek_to(boost::none, v);
return std::make_pair(
graph_traits<oqgraph3::graph>::in_edge_iterator(start),
graph_traits<oqgraph3::graph>::in_edge_iterator(end));
}
inline graph_traits<oqgraph3::graph>::degree_size_type
in_degree(
graph_traits<oqgraph3::graph>::vertex_descriptor v,
const oqgraph3::graph& g)
{
std::size_t count = 0;
for (std::pair<
graph_traits<oqgraph3::graph>::in_edge_iterator,
graph_traits<oqgraph3::graph>::in_edge_iterator> it= in_edges(v, g);
it.first != it.second; ++it.first)
{
++count;
}
return count;
}
// EdgeListGraph concepts
inline std::pair<
graph_traits<oqgraph3::graph>::edge_iterator,
graph_traits<oqgraph3::graph>::edge_iterator>
edges(const oqgraph3::graph& g)
{
std::size_t end= std::size_t(-1);
std::size_t start= end;
if (g.num_edges())
start= 0;
return std::make_pair(
graph_traits<oqgraph3::graph>::edge_iterator(
const_cast<oqgraph3::graph*>(&g), start),
graph_traits<oqgraph3::graph>::edge_iterator(
const_cast<oqgraph3::graph*>(&g), end));
}
inline std::pair<
graph_traits<oqgraph3::graph>::vertex_iterator,
graph_traits<oqgraph3::graph>::vertex_iterator>
vertices(const oqgraph3::graph& g)
{
oqgraph3::cursor*
start= new oqgraph3::cursor(const_cast<oqgraph3::graph*>(&g));
start->seek_to(boost::none, boost::none);
return std::make_pair(
graph_traits<oqgraph3::graph>::vertex_iterator(start),
graph_traits<oqgraph3::graph>::vertex_iterator(
new oqgraph3::cursor(const_cast<oqgraph3::graph*>(&g))));
}
inline graph_traits<oqgraph3::graph>::vertices_size_type
num_vertices(const oqgraph3::graph& g)
{
std::size_t count = 0;
for (std::pair<
graph_traits<oqgraph3::graph>::vertex_iterator,
graph_traits<oqgraph3::graph>::vertex_iterator> i= vertices(g);
i.first != i.second; ++i.first)
{
++count;
}
return count;
}
inline property_map<
oqgraph3::graph,
edge_weight_t>::const_type::reference
get(
edge_weight_t,
const oqgraph3::graph& g,
const property_map<
oqgraph3::graph,
edge_weight_t>::const_type::key_type& key)
{ return key.weight(); }
inline property_map<
oqgraph3::graph,
edge_weight_t>::const_type
get(edge_weight_t,
const oqgraph3::graph& g)
{ return property_map<oqgraph3::graph, edge_weight_t>::const_type(g); }
inline property_map<
oqgraph3::graph,
edge_index_t>::const_type::reference
get(edge_index_t,
const oqgraph3::graph&,
const property_map<
oqgraph3::graph,
edge_index_t>::const_type::key_type& key)
{ return key._cursor; }
inline property_map<oqgraph3::graph, edge_index_t>::const_type
get(edge_index_t, const oqgraph3::graph& g)
{ return property_map<oqgraph3::graph, edge_index_t>::const_type(g); }
inline property_map<oqgraph3::graph, edge_index_t>::const_type::reference
get(const property_map<oqgraph3::graph, edge_index_t>::const_type&,
const property_map<oqgraph3::graph,
edge_index_t>::const_type::key_type& key)
{ return key._cursor; }
inline property_map<oqgraph3::graph, vertex_index_t>::const_type::reference
get(vertex_index_t, const oqgraph3::graph&,
const property_map<oqgraph3::graph,
vertex_index_t>::const_type::key_type& key)
{ return key; }
inline property_map<oqgraph3::graph, vertex_index_t>::const_type
get(vertex_index_t, const oqgraph3::graph& g)
{ return property_map<oqgraph3::graph, vertex_index_t>::const_type(g); }
inline optional<graph_traits<oqgraph3::graph>::vertex_descriptor>
find_vertex(oqgraph3::vertex_id id, const oqgraph3::graph& g)
{
// Fix for https://bugs.launchpad.net/oqgraph/+bug/1196020 returning vertex even when not in graph
// Psuedocode for fix:
// if count(*) from g->TABLE where source=id or target=id > 0 then return id else return null
oqgraph3::cursor* found_cursor = new oqgraph3::cursor(const_cast<oqgraph3::graph*>(&g));
bool found = (found_cursor->seek_to(id, boost::none) && found_cursor->seek_to(boost::none, id));
delete found_cursor;
if (found) {
// id is neither a from or a to in a link
return optional<graph_traits<oqgraph3::graph>::vertex_descriptor>();
}
return id;
}
}
|