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author | Daniel Baumann <daniel.baumann@progress-linux.org> | 2024-03-09 13:19:48 +0000 |
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committer | Daniel Baumann <daniel.baumann@progress-linux.org> | 2024-03-09 13:20:02 +0000 |
commit | 58daab21cd043e1dc37024a7f99b396788372918 (patch) | |
tree | 96771e43bb69f7c1c2b0b4f7374cb74d7866d0cb /web/server/h2o/libh2o/deps/klib/kbit.h | |
parent | Releasing debian version 1.43.2-1. (diff) | |
download | netdata-58daab21cd043e1dc37024a7f99b396788372918.tar.xz netdata-58daab21cd043e1dc37024a7f99b396788372918.zip |
Merging upstream version 1.44.3.
Signed-off-by: Daniel Baumann <daniel.baumann@progress-linux.org>
Diffstat (limited to 'web/server/h2o/libh2o/deps/klib/kbit.h')
-rw-r--r-- | web/server/h2o/libh2o/deps/klib/kbit.h | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/web/server/h2o/libh2o/deps/klib/kbit.h b/web/server/h2o/libh2o/deps/klib/kbit.h new file mode 100644 index 000000000..3793cf837 --- /dev/null +++ b/web/server/h2o/libh2o/deps/klib/kbit.h @@ -0,0 +1,30 @@ +#ifndef KBIT_H +#define KBIT_H + +#include <stdint.h> + +static inline uint64_t kbi_popcount64(uint64_t y) // standard popcount; from wikipedia +{ + y -= ((y >> 1) & 0x5555555555555555ull); + y = (y & 0x3333333333333333ull) + (y >> 2 & 0x3333333333333333ull); + return ((y + (y >> 4)) & 0xf0f0f0f0f0f0f0full) * 0x101010101010101ull >> 56; +} + +static inline uint64_t kbi_DNAcount64(uint64_t y, int c) // count #A/C/G/T from a 2-bit encoded integer; from BWA +{ + // reduce nucleotide counting to bits counting + y = ((c&2)? y : ~y) >> 1 & ((c&1)? y : ~y) & 0x5555555555555555ull; + // count the number of 1s in y + y = (y & 0x3333333333333333ull) + (y >> 2 & 0x3333333333333333ull); + return ((y + (y >> 4)) & 0xf0f0f0f0f0f0f0full) * 0x101010101010101ull >> 56; +} + +#ifndef kroundup32 // round a 32-bit integer to the next closet integer; from "bit twiddling hacks" +#define kroundup32(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, ++(x)) +#endif + +#ifndef kbi_swap +#define kbi_swap(a, b) (((a) ^= (b)), ((b) ^= (a)), ((a) ^= (b))) // from "bit twiddling hacks" +#endif + +#endif |