blob: a8fbe3e699c31e4e67f190fdd95156ee3d1100d1 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
|
"bwa" sample introduction
==============
This sample demonstrates how to build [bwa](https://github.com/lh3/bwa) into
WebAssembly with simd support and run it with iwasm.
## Preparation
please refer to [installation instructions](../README.md).
## Build
``` shell
$ mkdir build && cd build
$ cmake ..
$ make
# to verify
$ ls bwa.wasm
```
## Download sample data
Download the bwa-0.7.15 binary package from
[such an address](https://sourceforge.net/projects/bio-bwa/files/bwakit/bwakit-0.7.15_x64-linux.tar.bz2/download),
a sample data file named **hs38DH.fa** will be used later.
If want more data, please refer to http://hgdownload.cse.ucsc.edu/goldenpath/hg19/bigZips/
## Run workload
Firstly please build iwasm with simd support:
``` shell
$ cd <wamr dir>/product-mini/platforms/linux/
$ mkdir build && cd build
$ cmake ..
$ make
```
Then compile wasm file to aot file and run:
``` shell
$ cd <wamr dir>/samples/workload/bwa/build
$ <wamr dir>/wamr-compiler/build/wamrc -o bwa.aot bwa.wasm
$ <wamr dir>/product-mini/platforms/linux/iwasm --dir=. bwa.aot index hs38DH.fa
```
|
